Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ambrosiozyma_20monospora_20[genbank_20GCA_5F001599995.1_202016-03- 01] 118 sequences; 24,978,438 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq12 187 5e-42 seq40 140 6e-28 seq3 134 2e-26 seq17 129 1e-24 >seq12 Length=722896 Score = 187 bits (206), Expect = 5e-42 Identities = 372/543 (69%), Gaps = 11/543 (2%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 ||||| || ||||||||| | || ||||| ||||| || || || | || || || Sbjct 314444 TTTTGATAGTCAGAAACTCTCTTCTCGAAGAAGTTAGTCTTACCAGCCAAGGAAATATTT 314385 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATA-ATATTTTTCTCCTATCAATACATATAA 38950 | ||| || || ||||| ||| || || || || || || | | ||| || || Sbjct 314384 TCCATGAAGTCGAATGGGTTTGTGACGTTGTAGATCTTCTTG-CATCCCAAAGCAACCAA 314326 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 ||||| || || ||||||||||| ||||| |||| || ||||| ||||||||||| || Sbjct 314325 CAATCTGTCAGCAACAAATTCAACGTATTGACACATCAAGTCACAGTTCATACCCAACAA 314266 Query 39011 TTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaatta 39069 || | ||| || |||||| | || | || ||||| || || || |||| | || | Sbjct 314265 CTTGACTGGCAAAGCATCAGTGAAGTATCTC-TTTTCAATGTCAACGGCTTCAGTGATAA 314207 Query 39070 tcataattatattattttttga--taatttatatttaatatgattcgcatataGTAAACA 39127 || | | | |||| || | | | | || | ||| | ||| ||||| Sbjct 314206 TCTTGGCAACA--ATTTCTTCATCTGGGGTGTTGTTCAAGTGA---GAGAATAACAAACA 314152 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 || ||||| ||||| | |||||| || ||| | || ||||| ||| ||||| || || Sbjct 314151 AGCGAAATCAGTATGCAGACCTTCATCTCTACAGATCAATTCGTTAGAGAAAGTCAAACC 314092 Query 39188 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 39247 |||||| || |||||||| || | ||| || || | |||||| || ||| ||||| || Sbjct 314091 TGGCATCAAACCTCTCTTCTTCAACCAGAAGATGGCAGCAAAAGAACCAGAGAAGAAAAT 314032 Query 39248 ACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAAT 39307 |||||| ||| ||||| || | | |||| | ||||||| || ||||| |||| Sbjct 314031 ACCCTCAACAGCAGCAAAGGCAACCAATCTTTCACCAAACAAAGCATTTTCATCAGAAAT 313972 Query 39308 CCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 ||| | | ||||| || ||||||| | ||||| | || | || || ||||| || || Sbjct 313971 CCATCTCAAAGCCCAGTCCGCTTTTTCTCTGATACATGGAACGTTATCAATAGCATTGAA 313912 Query 39368 TAA 39370 ||| Sbjct 313911 TAA 313909 >seq40 Length=167105 Score = 140 bits (154), Expect = 6e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 |||||||||| | || ||| || || || | ||| | || || || || || || | Sbjct 19992 TACCACCTCTCAATCTTAAAACCAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAGTCAG 19933 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 | || | || | || || ||||| |||||||| ||||||||||||||||| ||||||| Sbjct 19932 ACAARGTTCTACCATCTTCTAATTGCTTACCAGCGAAAATTAATCTCTGTTGATCAGGTG 19873 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 | || || || |||||||| || || ||| || ||| || || || || ||||| | Sbjct 19872 GAATACCCTCCTTATCTTGGATCTTTGATTTAACGTTATCAATGGTGTCAGATGATTCAA 19813 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| | ||| || || |||||||| |||||||||| || || ||||| Sbjct 19812 CTTCCAAAGTGATAGTCTTACCAGTCAATGTTTTAACAAAGATTTGCAT 19764 Score = 93.3 bits (102), Expect = 8e-14 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || | || | || || || || || || Sbjct 19765 ATACCACCTCTCAATCTCAACACCAAGTGAAGWGTTGATTCCTTTTGRATGTTGTAGTCA 19706 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || ||||| |||||||| ||||| ||||| |||||||||||| Sbjct 19705 GACAARGTTCTACCATCTTCTAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGT 19646 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || || ||||| || || || || ||||| Sbjct 19645 GGAATACCTTCCTTATCTTGWATCTTGGACTTAACATTGTCAATGGTGTCAGATGATTCG 19586 Query 172020 AC 172021 || Sbjct 19585 AC 19584 >seq3 Length=1000385 Score = 134 bits (148), Expect = 2e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || ||||||||||| | || || || || || ||||| | || || ||| || || Sbjct 936288 ATGATACCACCTCTCAATCTCAAAACCAAGTGCAAAGTGGATTCCTTTTGAATGTTGTAG 936347 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | || |||| |||||||| ||||| ||||| || ||||| ||||| ||| Sbjct 936348 TCGGACAAGGTTCTACCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGATCA 936407 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || ||||| |||||||| || || || ||||| || || || || ||| Sbjct 936408 GGTGGGATACCTTCCTTATCTTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAAGAT 936467 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||| | ||||| || |||||||| || || |||| || || |||||| Sbjct 936468 TCAACTTCCAAGGTAATTGTCTTACCAGTCAAGGTCTTAACAAAAATTTGCATT 936521 >seq17 Length=626534 Score = 129 bits (142), Expect = 1e-24 Identities = 177/246 (72%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || || || || | ||| | || || ||| || Sbjct 620741 TTCTTACCACCACCTCTCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTG 620800 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || || |||| || | || |||||||| |||||||||||||| ||||| |||||| Sbjct 620801 TAGTCAGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGG 620860 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| || ||||| || ||||| || || || ||||| || || || || Sbjct 620861 TCAGGTGGGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAG 620920 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 ||||| || || | ||| ||||| ||||| || | || |||| || || ||||| ||| Sbjct 620921 GATTCGACCTCCAAAGTGATGGTCTTACCTGTAAGGGTCTTAACAAAAATTTGCATCTTA 620980 Query 172074 -TTATA 172078 ||||| Sbjct 620981 GTTATA 620986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905134664924400