Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ambrosiozyma_20monospora_20[genbank_20GCA_5F001599995.1_202016-03- 01] 118 sequences; 24,978,438 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq40 116 3e-21 seq3 93.3 4e-14 seq17 91.5 1e-13 >seq40 Length=167105 Score = 116 bits (128), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||||| || || || | ||||| | ||||| ||| | Sbjct 19764 ATGCAAATCTTTGTTAAAACATTGACTGGTAAGACTATCACTTTGGAAGTTGAATCATCT 19823 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| ||| || ||||| |||||||| || || ||||| Sbjct 19824 GACACCATTGATAACGTTAAATCAAAGATCCAAGATAAGGAGGGTATTCCACCTGATCAA 19883 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || ||| | |||| || || || ||| | ||||||| ||||| |||| | | |||| Sbjct 19884 CAGAGATTAATTTTCGCTGGTAAGCAATTAGAAGATGGTAGAACYTTGTCTG--ACTACA 19941 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 | || ||||| ||||| || |||| || || |||||||||||||| || || Sbjct 19942 ACATCCAAAAGGAATCAACTCTTCACTTGGTTTTAAGATTGAGAGGTGGTAA 19993 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/136 (75%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 ||||| || ||||| || || || || |||||| | |||| || || || ||| | ||| Sbjct 19629 GATAAGGAAGGTATTCCACCTGACCAACAAAGATTGATTTTCGCTGGTAAGCAATTAGAA 19688 Query 25328 GATGATAGAAA--TGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGT 25385 |||| ||||| |||| | | ||||| || ||||| ||||| || |||| || |||| Sbjct 19689 GATGGTAGAACYTTGTCTG--ACTACAACATYCAAAAGGAATCAACWCTTCACTTGGTGT 19746 Query 25386 TAAGATTGAGAGGAGG 25401 | ||||||||||| || Sbjct 19747 TGAGATTGAGAGGTGG 19762 >seq3 Length=1000385 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || || || || | || || | ||||| ||| | | Sbjct 936520 ATGCAAATTTTTGTTAAGACCTTGACTGGTAAGACAATTACCTTGGAAGTTGAATCTTCC 936461 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || || || ||||| || ||||| || || ||||| Sbjct 936460 GACACCATTGACAATGTCAAGTCCAAGATCCAAGATAAGGAAGGTATCCCACCTGATCAA 936401 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 |||||| | || | | ||| || ||| | ||||| | ||||| |||| ||| |||| Sbjct 936400 CAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGTAGAACCTTGTC--CGACTACA 936343 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | |||||||| |||||||| | || || || || ||||||||||| || Sbjct 936342 ACATTCAAAAGGAATCCACTTTGCACTTGGTTTTGAGATTGAGAGGTGG 936294 >seq17 Length=626534 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | ||||| || || | || || || | ||||| | || |||||| || Sbjct 620979 AAGATGCAAATTTTTGTTAAGACCCTTACAGGTAAGACCATCACTTTGGAGGTCGAATCC 620920 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 || || || || | || || || || || || || ||||| || || || Sbjct 620919 TCTGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGAC 620860 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || |||||| | |||| | || || ||| | ||||||| ||||| | | || ||| Sbjct 620859 CAACAAAGATTGATTTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGACTAC 620800 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || |||||||| |||||||| |||| || || || ||||||||||| || Sbjct 620799 AACATTCAAAAGGAATCCACTCTTCACTTGGTTTTGAGATTGAGAGGTGG 620750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445093743485760