Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ambrosiozyma_20monospora_20[genbank_20GCA_5F001599995.1_202016-03- 01] 118 sequences; 24,978,438 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq40 158 3e-33 seq3 145 2e-29 seq17 140 7e-28 seq25 107 4e-18 >seq40 Length=167105 Score = 158 bits (174), Expect = 3e-33 Identities = 152/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 ||| ||||||||||||||||||| ||| || | ||||| |||| ||| || || || | Sbjct 19955 TTCCTTTTGGATGTTGTAGTCAGACAAR-GTTCTACCATCTTCTAATTGCTTACCAGCGA 19897 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 | || || | ||||| ||| |||||||||||||| ||||||||||||| ||| ||| Sbjct 19896 AAATTAATCTCTGTTGATCAGGTGGAATACCCTCCTTATCTTGGATCTTTGATTTAACGT 19837 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 |||| || ||||| || | ||| ||||| | |||||| |||||||| ||||| || |||| Sbjct 19836 TATCAATGGTGTCAGATGATTCAACTTCCAAAGTGATAGTCTTACCAGTCAATGTTTTAA 19777 Query 283087 CGAATATCTGCAT 283099 | || || ||||| Sbjct 19776 CAAAGATTTGCAT 19764 Score = 100 bits (110), Expect = 6e-16 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 ||| ||||| ||||||||||||| ||| || | ||||| |||| ||| || || || | Sbjct 19727 TTCCTTTTGRATGTTGTAGTCAGACAAR-GTTCTACCATCTTCTAATTGCTTACCAGCGA 19669 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 | ||||| | |||||||||| |||||||| ||||| ||||| ||||| | || || Sbjct 19668 AAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTATCTTGWATCTTGGACTTAACAT 19609 Query 283027 TATCGATAGTGTCCGAAGCTTCGAC 283051 | || || ||||| || | |||||| Sbjct 19608 TGTCAATGGTGTCAGATGATTCGAC 19584 >seq3 Length=1000385 Score = 145 bits (160), Expect = 2e-29 Identities = 166/219 (76%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTC 282949 |||| || || ||| ||| ||||| ||||||||||| | |||| || | || || || Sbjct 936312 ACCAAGTGCAAAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAG-GTTCTACCGTCTTC 936370 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 | ||| || |||||||||||||| | |||||| ||| || ||||| ||||| ||||| Sbjct 936371 CAATTGCTTACCGGCAAAGATCAATCTTTGTTGATCAGGTGGGATACCTTCCTTATCTTG 936430 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 |||||| | || || | || || ||||| |||| ||| ||||| | || || ||||| Sbjct 936431 GATCTTGGACTTGACATTGTCAATGGTGTCGGAAGATTCAACTTCCAAGGTAATTGTCTT 936490 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCATTTTC-ATAT 283107 ||| ||||| |||||||| || || |||||| || |||| Sbjct 936491 ACCAGTCAAGGTCTTAACAAAAATTTGCATTGTCTATAT 936529 >seq17 Length=626534 Score = 140 bits (154), Expect = 7e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||| ||||||||||||| | || | ||||| || | ||| || || ||||| Sbjct 620785 TTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAA 620844 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||||| | |||||||||| || ||||| ||||||||||||||||| | || || | Sbjct 620845 AATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGGACTTGACATT 620904 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| || | |||||| || | |||||| |||||||| || | |||||||| Sbjct 620905 GTCAATGGTGTCAGAGGATTCGACCTCCAAAGTGATGGTCTTACCTGTAAGGGTCTTAAC 620964 Query 283088 GAATATCTGCATTTT 283102 || || ||||| || Sbjct 620965 AAAAATTTGCATCTT 620979 >seq25 Length=354343 Score = 107 bits (118), Expect = 4e-18 Identities = 179/256 (70%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 316947 AATGAAGTCAACGATAGACGTGTTAGATTCGGATCCGTCGAGGTCATGCTCAACATATGC 317006 || ||| ||||| | | |||| || |||| || || | || ||||| || || | Sbjct 309444 AACGAATTCAACAACTGGAGTGTCAGCAGCGGAACCATCAATATCGTGCTCGACGTAGAC 309503 Query 317007 AGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAACT-GACCGTTCACAATCGCCCTCA 317065 |||| | | | | | ||| | |||| | | ||||| ||||||| |||| || |||| Sbjct 309504 AGTTCT-ACATTCTTCTTGGGATGGAAAACCTTCAACTTGACCGTTAGCAATAGCTCTCA 309562 Query 317066 TCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCA 317125 ||| || ||||| |||||||| || || || || | |||||| | | | |||||| Sbjct 309563 TCAAGGTAGACTTACCAGCACCGTTAGGACCACACAAACCATATCTTCTAGCTCTCTTCA 309622 Query 317126 GATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAAT 317185 |||| |||| ||||||| | |||||| ||||||| |||| ||||||||||| | Sbjct 309623 ATCTAAATTGGGTCTTGTTCAACAAGATCTTAGCACCATAAGCCAATGAGAACTCACAGT 309682 Query 317186 CACACAGGTCCTCGCC 317201 ||||| ||| || || Sbjct 309683 TACACAAGTCTTCACC 309698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046737617461172