Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascoidea_20asiatica_20[genbank_20GCA_5F001600695.1_202016-03-01] 71 sequences; 20,313,720 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq10 179 5e-40 seq4 147 3e-30 seq1 141 1e-28 seq8 123 4e-23 seq29 114 2e-20 seq3 87.8 3e-12 >seq10 Length=718177 Score = 179 bits (198), Expect = 5e-40 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | |||||| || ||||||||||| |||||||| ||||||||||| || Sbjct 467986 CCACCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGAT 468045 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| ||||||||||| ||||||||||| |||||||| ||||| || ||| Sbjct 468046 AATGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTTGATCTGGTGGA 468105 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| |||||| ||| ||| ||| Sbjct 468106 ATACCTTCTTTATCTTGAATTTTACTTTTAACATTATCAATAGTATCAGAAGATTCAACT 468165 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 |||| || ||||||||||||||||| ||||||| || ||||||||||| Sbjct 468166 TCTAAAGTAATTGTTTTACCTGTTAAGGTTTTAACAAAAATTTGCATTTT 468215 >seq4 Length=1551466 Score = 147 bits (162), Expect = 3e-30 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | |||||| || ||||| | ||| |||||||| ||||||||||| || Sbjct 1333329 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGAT 1333388 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| |||||||||||||| ||||||||||| | ||| ||||| || ||| Sbjct 1333389 AAGGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGTGGA 1333448 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||||||||| |||||| || ||| ||| Sbjct 1333449 ATTCCTTCTTTATCTTGAATTTTTGATTTAACATTATCAATAGTATCAGATGATTCAACT 1333508 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || | || || |||||||| ||||| ||||||| || |||||||| Sbjct 1333509 TCCAAGGTAATGGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 1333555 Score = 138 bits (152), Expect = 2e-27 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | ||| | || ||||| | ||||| ||||| ||||||||||| || Sbjct 1333101 CCGCCTCTTAATCTAAGAACTAAATGAAGTGTAGACTCTTTTTGAATATTATAATCAGAT 1333160 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| |||||||||||||| ||||||||||| | ||| ||||| |||||| Sbjct 1333161 AAGGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATCAAACGTTGTTGATCAGGAGGA 1333220 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| |||||| || ||| ||| Sbjct 1333221 ATACCTTCTTTATCTTGAATCTTGGACTTAACATTATCAATAGTATCAGATGATTCAACT 1333280 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || |||||||||||||| || ||||||| || |||||||| Sbjct 1333281 TCTAAAGTAATTGTTTTACCTGTCAAAGTTTTAACAAAAATTTGCAT 1333327 Score = 138 bits (152), Expect = 2e-27 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| | || ||||| | ||| |||||||| |||||||| || || Sbjct 1333557 CCACCTCTTAATCTAAGAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAGTCAGAC 1333616 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | || ||||||||||| ||||||||||| || | ||| || || |||||| Sbjct 1333617 AAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGAGGA 1333676 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| |||||||||| ||||||| Sbjct 1333677 ATACCTTCTTTATCTTGAATTTTACTTTTGACATTATCAATAGTATCTGAAGATTCTACT 1333736 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| |||||||| ||||| ||||| || || | || |||||||| Sbjct 1333737 TCTAAAGTGATTGTCTTACCAGTTAAGGTCTTGACAAAAATTTGCAT 1333783 Score = 125 bits (138), Expect = 1e-23 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||||||||||||| || ||||| | ||| |||||||| || || || || || Sbjct 1333785 CCACCTCTAAGTCTTAAGACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCAGAT 1333844 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| |||||||| || || || || || || | ||| ||||| || ||| Sbjct 1333845 AAAGTTCTACCATCTTCTAATTGCTTACCGGCGAAGATTAAACGTTGTTGATCTGGTGGA 1333904 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||||||||| ||||| || ||| ||| Sbjct 1333905 ATTCCTTCTTTATCTTGGATCTTTGATTTAACATTATCAATTGTATCAGATGATTCAACT 1333964 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 |||| || || |||||||| ||||| || || | ||| ||||||||||| Sbjct 1333965 TCTAAAGTAATGGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCATTTT 1334014 >seq1 Length=2713227 Score = 141 bits (156), Expect = 1e-28 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | |||||| || ||||||||||| |||||||| || |||||||| || Sbjct 1439211 CCACCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATGTTATAATCAGAT 1439270 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| ||||||||||| |||||||| || |||||||| ||||| || || Sbjct 1439271 AAAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCTGGTGGG 1439330 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||||| ||| ||| ||| Sbjct 1439331 ATACCTTCTTTATCTTGAATTTTGGATTTAACATTATCAATGGTATCAGAAGATTCCACT 1439390 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAA 146264 |||| ||||| ||||||||||| | ||||||| Sbjct 1439391 TCTAAAGTGATAGTTTTACCTGTAAGGGTTTTAA 1439424 >seq8 Length=720923 Score = 123 bits (136), Expect = 4e-23 Identities = 163/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | ||| | || ||||| | ||| |||||||| ||||||||||| || Sbjct 254690 CCTCCTCTTAATCTAAGAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGAT 254749 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| ||||||||||| |||||||||||||| | ||| ||||| || ||| Sbjct 254750 AAGGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 254809 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||||||||||| |||||| || ||| ||| Sbjct 254810 ATACCTTCTTTATCTTAGATTTTACTTTTAACGTTATCAATAGTATCAGAGGATTCAACT 254869 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATT 146283 |||| || || |||||||| ||||| ||||| | || ||||| ||| |||| Sbjct 254870 TCTAAAGTAATAGTTTTACCAGTTAAAGTTTTGACAAAAATTTG-ATTATATT 254921 >seq29 Length=110012 Score = 114 bits (126), Expect = 2e-20 Identities = 253/376 (67%), Gaps = 9/376 (2%) Strand=Plus/Plus Query 209087 TTACACGGATTTCATGTTCATGAATATGGTGATGTGAGTAATGGTTGTACATCAGCAGGA 209146 ||| | || |||||| ||||| ||| ||||||| | ||||||||||| || || || Sbjct 46115 TTAAAAGGTTTTCATATTCATCAATTTGGTGATAATACAAATGGTTGTACTTCTGCTGGT 46174 Query 209147 GAACATTTTAATCCATATAATAGACAACATGGAGATATTAGTGATAAAATACATCGTCAT 209206 |||||||||||| | ||||| | ||||| | | |||| |||| | | ||| Sbjct 46175 CCACATTTTAATCCTTTTAATAAAACTCATGGTTCTCCAATTGATGAAAT---TAGACAT 46231 Query 209207 GTTGGTGATTTTGGTAATGTGTATGCAGACGAAAATGGCGTTGCTAATATTGATTTTCAC 209266 ||||| ||||| |||||| | | | || |||||| | || || | | || | Sbjct 46232 GTTGGAGATTTAGGTAATATTAAAACTGATTCAAATGGTTTAGCAAAAGGTAAATTAAAT 46291 Query 209267 GATGATATTATATCATTGTGTGGAACAAATAATATAATAGGAAGAACATTAGTAGTTCAT 209326 ||| || | || ||| | ||| || || |||||| || ||||| | ||| ||||| Sbjct 46292 GATAATTTAATTAAATTATTTGGTCCATATTCTATAATTGGTAGAACTGTTGTAATTCAT 46351 Query 209327 GATTCGCCTGATGATTTAGGAAAAACTGATCACCC--TTTGAGTAAAACAAGTGGTAATT 209384 ||| ||||||||||| ||| || ||| || || |||| || ||||||| Sbjct 46352 GATGGTGAAGATGATTTAGGTAAAGGTGGTCATCCAGATTCTTTAAA--AACTGGTAATG 46409 Query 209385 CTGGCGGAAGATTAGGTTGTGGTATTATTGGTATTGCAAAAGATTAATTGAAGGTTATGT 209444 |||| || ||| | ||||||| | |||||| | | || | |||| | |||| | Sbjct 46410 CTGGTGGTAGACCTGCTTGTGGTGTAATTGGTTTATCCAATTAATAATCTA--YTTATAT 46467 Query 209445 ATTTATTTAATAATTC 209460 | ||||||| | |||| Sbjct 46468 ACTTATTTACTTATTC 46483 >seq3 Length=2066014 Score = 87.8 bits (96), Expect = 3e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 10443 TATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCT 10502 |||| ||| | || || ||||| | |||||| | || || ||| | ||| ||| Sbjct 1455464 TATGGTAGAGTTGCACCAAGATCGGGTTTAGCAGTTAAAAATGGAATTACCACTGGTGCT 1455523 Query 10503 GGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAAT 10562 ||||| ||||| | ||||||||||||| | || | | | ||||| |||| ||| || Sbjct 1455524 GGAGTTATTGATGCAGATTATAGAGGAGAAGTTAAAATTGTTTTATTCAATCTTTCAGAT 1455583 Query 10563 GAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618 |||| |||| ||| || | ||| |||||||| | |||||| | | |||||||| Sbjct 1455584 AAAGAATTTAAAATTAAAAAAGGTGATAGAATTGCACAATTAGTTTTAGAAAAAAT 1455639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743525740120320