Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascoidea_20asiatica_20[genbank_20GCA_5F001600695.1_202016-03-01] 71 sequences; 20,313,720 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4 100 3e-16 seq8 89.7 5e-13 seq10 84.2 2e-11 seq1 84.2 2e-11 >seq4 Length=1551466 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||||| ||| | | |||||| |||| ||||||||||||||||| |||||||| Sbjct 1333101 CCGCCTCTTAATCTAAGAACTAAATGAAGTGTAGACTCTTTTTGAATATTATAATCAGAT 1333160 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | ||||| || ||| | |||| |||||| ||||| ||||| Sbjct 1333161 AAGGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATCAAACGTTGTTGATCAGGAGGA 1333220 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| | || | ||| | | || | || || | | || || Sbjct 1333221 ATACCTTCTTTATC-TTGAATCTTGGACTTAACATTATCAATAGTATCAGATGATTCAAC 1333279 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || ||||| ||||| || || ||||||||| Sbjct 1333280 TTCTAAAGTAATTGTTTTACCTGTCAAAGTTTTAACAAAAATTTGCATA 1333328 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | |||||||| |||| || || ||||||||||| |||||||| Sbjct 1333329 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGAT 1333388 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | ||||| || ||| | |||| |||||| ||||| || || Sbjct 1333389 AAGGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGTGGA 1333448 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||||| |||| | | || | || || | | || || Sbjct 1333449 ATTCCTTCTTTATC-TTGAATTTTTGATTTAACATTATCAATAGTATCAGATGATTCAAC 1333507 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || || || || || ||||| || || ||||||||| Sbjct 1333508 TTCCAAGGTAATGGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCATA 1333556 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | | |||||| |||| || || ||||||||||| ||||| || | Sbjct 1333557 CCACCTCTTAATCTAAGAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAGTCAGAC 1333616 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| | |||||||||||| | || | |||||| || || ||||| Sbjct 1333617 AAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGAGGA 1333676 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||| |||| | | || | || || | | || || Sbjct 1333677 ATACCTTCTTTATC-TTGAATTTTACTTTTGACATTATCAATAGTATCTGAAGATTCTAC 1333735 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || || || || || || || ||||||||| Sbjct 1333736 TTCTAAAGTGATTGTCTTACCAGTTAAGGTCTTGACAAAAATTTGCATA 1333784 >seq8 Length=720923 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | | |||||| |||| || || ||||||||||| |||||||| Sbjct 254690 CCTCCTCTTAATCTAAGAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGAT 254749 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | |||||||||||| | |||| |||||| ||||| || || Sbjct 254750 AAGGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 254809 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || |||||||| || |||||| ||| | | || | || || | || || || Sbjct 254810 ATACCTTCTTTATCTTAGATTTTACTTTTAACGTTATCAATAGTATCAGAGGATTCAACT 254869 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTG 139761 || | || | || || || || || ||||| || || ||||| Sbjct 254870 TCTAAAGTAATAGTTTTACCAGTTAAAGTTTTGACAAAAATTTG 254913 >seq10 Length=718177 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | |||||||| || | || || ||||||||||| |||||||| Sbjct 467986 CCACCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGAT 468045 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| | |||||||||||| | || | | ||| ||||| || || Sbjct 468046 AATGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTTGATCTGGTGGA 468105 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||| ||||| | | || | || || | | || || Sbjct 468106 ATACCTTCTTTATC-TTGAATTTTACTTTTAACATTATCAATAGTATCAGAAGATTCAAC 468164 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || || || ||||| || || |||||||| Sbjct 468165 TTCTAAAGTAATTGTTTTACCTGTTAAGGTTTTAACAAAAATTTGCAT 468212 >seq1 Length=2713227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/151 (73%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | |||||||| || | || || |||||||||||||||||||| Sbjct 1439211 CCACCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATGTTATAATCAGAT 1439270 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | |||||||||||| |||| | | ||| ||||| || || Sbjct 1439271 AAAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCTGGTGGG 1439330 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTA 139688 || |||||||| || ||| |||| | |||| Sbjct 1439331 ATACCTTCTTTATC-TTGAATTTTGGATTTA 1439360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063559743200