Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascoidea_20asiatica_20[genbank_20GCA_5F001600695.1_202016-03-01] 71 sequences; 20,313,720 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq10 105 5e-18 seq8 96.9 3e-15 seq4 84.2 2e-11 >seq10 Length=718177 Score = 105 bits (116), Expect = 5e-18 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || ||||| | ||| || ||||| | ||| ||||| || ||||| | | Sbjct 467997 TCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTACC 468056 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || |||||||| || |||||||| |||| |||||||| | || | ||||||||| Sbjct 468057 ATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTT 468116 Query 43014 TTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || ||| | ||| ||| || | ||| || || || || || |||| || Sbjct 468117 ATCT-TGAATTTTACT-TTTAACATTATCAATAGTATCAGAAGATTCAACTTCTAAAGTA 468174 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || ||||| || |||| ||||| ||||||||||||||||| Sbjct 468175 ATTGTTTTACCTGTTAAGGTTTTAACAAAAATTTGCATTTT 468215 >seq8 Length=720923 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | | ||| | || ||||| | ||| || ||||| | ||| ||||| || Sbjct 254690 CCTCCTCTTAATCTAAGAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGAT 254749 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | | || || |||||||| || ||||||||||| || |||||||| | || Sbjct 254750 AAGGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 254809 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || || | ||| ||| || | ||| || || | || || Sbjct 254810 ATACCTTCTTTATCTTAGATTTTACT-TTTAACGTTATCAATAGTATCAGAGGATTCAAC 254868 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTG 43106 |||| || |||||||| || |||| |||||| ||||||||||| Sbjct 254869 TTCTAAAGTAATAGTTTTACCAGTTAAAGTTTTGACAAAAATTTG 254913 >seq4 Length=1551466 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 |||||||| || ||||| | ||| || ||||| | ||||| || || || || | Sbjct 1333794 AGTCTTAAGACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCAGATAAAGTTCTA 1333853 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || || ||||| || ||||| || || || || |||||||| | || | |||||| Sbjct 1333854 CCATCTTCTAATTGCTTACCGGCGAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCT 1333913 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || || |||| ||| || | ||| ||| || | || || |||| || Sbjct 1333914 TTATCTTGGATCTTTGATTTAACATTATCAATTGTATCAGATGATTCAACTTCTAAAGTA 1333973 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || ||||| || |||| ||| || || |||||||||||||| Sbjct 1333974 ATGGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCATTTT 1334014 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||| | ||| || ||||| | ||| || || ||||| || | |||| || Sbjct 1333575 ACTAAATGAAGAGTTGATTCTTTTTGAATATTATAGTCAGACAAAGTTCTACCGTCTTCT 1333634 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| || |||||||| || || ||||| || | || | ||||||||| || || Sbjct 1333635 AATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGAGGAATACCTTCTTTATCT-TG 1333693 Query 43021 A--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTT 43078 | | ||| |||||| | ||| || || || || || |||| || || || | Sbjct 1333694 AATTTTACT-TTTGACATTATCAATAGTATCTGAAGATTCTACTTCTAAAGTGATTGTCT 1333752 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || |||| || || |||||||||||||| Sbjct 1333753 TACCAGTTAAGGTCTTGACAAAAATTTGCAT 1333783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369269996118