Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascoidea_20asiatica_20[genbank_20GCA_5F001600695.1_202016-03-01] 71 sequences; 20,313,720 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq15 410 1e-109 >seq15 Length=386167 Score = 410 bits (454), Expect = 1e-109 Identities = 632/887 (71%), Gaps = 25/887 (3%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||||||||| || ||||||||||||||||| || ||||| || |||| |||||||| Sbjct 129423 TTTTTGATAATCAGATACTCTTTTTTCAAAAAAATTAGTTTTACCAGCTAAAGAAATATT 129364 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACA--ATAGTATTTTTTACACCCTAATTCTAGT 12976 |||||||||||| || |||||| | |||| ||| |||||||| ||||| | | | Sbjct 129363 TTCCATAAAATCAAATGGATTTGT--AACATTATAAAATTTTTTATTACCTAAAGCAACT 129306 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 || ||||| || |||||||| || | || || |||||| | ||| ||||| |||| | Sbjct 129305 AATAATCTATCTGCAACAAATTCAACATATTGACACATTAATTTACAATTCATACCTAAT 129246 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 || |||| | ||| || || ||| | | |||||| |||||||| ||||| ||| Sbjct 129245 AAAGAAGCAGGTAAAGCATCAGTAAAATAATCTTTTTCAATATCAACAGCTTCAGTAATA 129186 Query 13097 ATGTCTCTTATTACGTTCTCTAATGGA---GGATT--TGAT-AGATGCTTAAACATCATA 13150 || | | | | || | ||||||| || || | || | ||| ||| | | | Sbjct 129185 ATTTTT-TGA--ACAAT---TAATGGATTTGGTTTATTAATTAAATGAGAAAATAATAAA 129132 Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || ||||||||| || | ||||||||||||| |||| || ||||||||||||| | Sbjct 129131 CAAGCAAAATCAGTATGAAGACCTTCATCTCTACAAATTAATTCATTTGAAAATGTTAAA 129072 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270 || ||||| | |||| |||||| | ||||||||| | |||||| || || || || || Sbjct 129071 CCTGGCATTAAACCTCTTTTTTTTAACCAAAATATTGAAGCAAAAGATCCAGAGAAGAAA 129012 Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT 13330 || |||||||| || ||||| || | || |||||| |||| | || ||| | Sbjct 129011 ATACCTTCAACAGCAGCAAAAGCAACTAATCTTTCAGCATATAAAGCATCATTATCATTA 128952 Query 13331 ATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTA 13390 ||||| || ||||| | ||||||||||||| || || |||| ||||| ||| Sbjct 128951 ATCCATCTTAAAGCCCATTCAGCTTTTTGTTTAATACATGGAATTGTTTCAATTGCATTA 128892 Query 13391 AATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATT 13450 |||||| | || ||||| || ||| |||||||||||||| ||||| ||| || Sbjct 128891 AATAAAAATTTATTTTCTTTTGGATCTTTAATATAAGTATCTAATAATAAAGAATAAGTT 128832 Query 13451 TCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACC 13510 || |||||||||||||||||| ||||| ||||||||||||||| |||| || | | Sbjct 128831 TCAGAATGAATATTTTCCATCATAATTTGAAAACCATAAAAACATTTAGCTTCAGGAATT 128772 Query 13511 TGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGC 13569 |||||||| | || ||||| |||| |||| ||||| ||||| || || ||| ||| || Sbjct 128771 TGAACTTCTGCAGAAAAAT-TTTCAACTAAATTTTCATTAACAATACCATCAGAAGCTGC 128713 Query 13570 aaaaaaaGCAAGTATGTGCTT--AATAAAttttttttC-GTTTTCTGACAAC--TTTAAC 13624 |||||| || | | ||| |||||| | |||| |||| | ||| || | Sbjct 128712 AAAAAATGCTA--AAACTCTTGAAATAAAAAATCTTTCATTTTTATTTAAACGATTATTC 128655 Query 13625 CAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCC 13684 ||||| | |||||||| |||||| | || || | |||||||| ||||| |||| Sbjct 128654 CAATCATGTAAATCTTTACTTAAATCAATTTCTTCTGCAGTCCAAAATGAAGCTTCAGCT 128595 Query 13685 TTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAAC 13731 || |||||||| ||| || || | ||| ||| ||||| | ||| Sbjct 128594 TTTTTATACATTTGCCAAATTTCATGATATTTAATTGGAAATAAAAC 128548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982027065542