Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascoidea_20asiatica_20[genbank_20GCA_5F001600695.1_202016-03-01] 71 sequences; 20,313,720 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1 224 1e-53 seq2 149 7e-31 seq4 96.9 4e-15 >seq1 Length=2713227 Score = 224 bits (248), Expect = 1e-53 Identities = 476/704 (68%), Gaps = 26/704 (4%) Strand=Plus/Plus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 || |||||||||||||| | ||||| ||||| |||||| ||| ||||| ||| || Sbjct 477961 AAATTTGAAGAAATGGGTATTGGTGGTTTAGATAATGAATTTACTCAAATTTTTAGAAGA 478020 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA-CATAT 164516 || ||||| |||| |||| | |||| |||||||||| | ||| ||| | Sbjct 478021 GCTTTTGCAAGTAGAATTTTTCCACCAGGTTTAATTGAAAAATTAGG-TATAACTCATGT 478079 Query 164517 AAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCAT 164576 ||||| || |||||| |||| ||||| ||| || ||||| ||||| || || || Sbjct 478080 TAAAGGTATGTTATTATATGGTCCTCCAGGTACTGGAAAAACTTTAATTGCAAGAAAAAT 478139 Query 164577 TGCTCAAGCTTTTAAATCGC----GACCCGTTAAAATTGTTAATGGTCCTGAATTATTGA 164632 || | || | |||||| || || || ||||||||||||||||| ||| | || | Sbjct 478140 TGGTAAAA-TGTTAAAT-GCAAATGAACCA--AAAATTGTTAATGGTCCAGAAATTTTAA 478195 Query 164633 ACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAG 164692 |||||||| || || |||| ||| ||||| || ||| | || |||||||| | Sbjct 478196 GTAAATATGTTGGATCTTCTGAAGAAAATATTAGAGCTTTATTTAAAGATGCTGAAGATG 478255 Query 164693 AACAAAAGAAAGCAGGTTTAGCTAGTAAA--TTACATGTTATTGTTTTTGATGAGATAGA 164750 || | || | |||| || | | || |||||| ||||| |||||||||| |||| Sbjct 478256 AATATAAATCAAAAGGTGAAG--AATCAAGTTTACATATTATTATTTTTGATGAATTAGA 478313 Query 164751 TGCTCTTTGCAA------------AAAACGTGGTGATAATATTATTCATGATGCAGTGGT 164798 | || ||| || || | ||| || || | | || |||| || || Sbjct 478314 TTCTGTTTTTAAACAAAGAGGTTCAAGAGGTGATGGTACTGGTGTTGCTGATAATGTTGT 478373 Query 164799 TAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGG 164858 |||||| || | | ||||| |||||||| || ||||||||||||||| | | || Sbjct 478374 TAATCAATTATTAGCAAAAATGGATGGTGTTGATCAATTAAATAATATTTTAGTCATTGG 478433 Query 164859 TATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATT 164918 |||||| || || |||||||||||| ||||||||||| |||||||| |||| ||| | Sbjct 478434 TATGACTAATAGAAAAGATTTAATTGATAATGCTTTATTAAGACCTGGTAGATTTGAAGT 478493 Query 164919 GAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCATGT 164978 || | ||||| ||||| || || | || | |||||| | | ||||| Sbjct 478494 TCAAGTTGAAATTTCTTTACCTGATGAAAATGGTAGAAAACAAATTCTTTTAATTCATAC 478553 Query 164979 GGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATAGCTGC 165038 ||||||| | | |||| | | ||||| || | ||| |||| || || Sbjct 478554 AAAAAAAATGAGAGATAATAATATGCTTAATAAAGATGTTAATATTAATGAAATTGCAGC 478613 Query 165039 CGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAA 165082 ||| ||||||| ||||||||| ||| | || || ||||||| Sbjct 478614 TTTAACAAAAAATTTTAGTGGTGCAGAAATTGAAGGTTTAGTAA 478657 >seq2 Length=2503681 Score = 149 bits (164), Expect = 7e-31 Identities = 382/579 (66%), Gaps = 57/579 (10%) Strand=Plus/Minus Query 6700 GGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTATCA 6759 |||| |||||| |||| || |||||||||||| ||||| ||||||| | |||| Sbjct 1553943 GGATAAGGATTGTAATTTATCAATTCAAAATCATCAAAGCAAAAATCATCGA---TATCG 1553887 Query 6760 G--ACtttttttttAATATTACAACAGGTGAAGGTTTTATTGATCGAGTT-AAT-TGTTC 6815 | || || ||| || || ||| ||| | | | | || || ||| |||| Sbjct 1553886 GTAACAGTTCGTTTGATGTT-CAATTTTGGAAAGCATCTTGGTTCTCTTTGAATCTGTTG 1553828 Query 6816 TTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTC 6875 ||| | ||| | |||||||| || | ||| |||||||||| ||||| || || Sbjct 1553827 TTTAAGAGCATCAATATGATCATTGTATACATGGGCATCTCCTAATGTATGGATGAAGGA 1553768 Query 6876 ACCTGGTTTCATAT--CAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCT 6933 || | ||||| ||| | | || || || | | ||||||||| ||||||||||| Sbjct 1553767 GCCACAATCCATATTGCAA-ACCATG-GCTATCATTTTTGTTAATAACGCATAAGAAGCA 1553710 Query 6934 ACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAA 6993 | |||||| ||||| |||||||||||||| ||||||||||| || |||| ||| Sbjct 1553709 ATATTAAAGGGTACTCCTAATCCCATATCGCAAGATCTTTGATATAATAAACAATTTAA- 1553651 Query 6994 ATATTGTCTATAG------------------------------------CATAAAATTGA 7017 | ||| || ||| ||||||||||| Sbjct 1553650 -TTTTGGCT-TAGATCCTTTCGATTTTTCTTCCTCGCTTGGAAAATTTACATAAAATTGA 1553593 Query 7018 CACAATACATGACATGGAGGTAAAACAGCCTGATCT---ATATCAGATGGATTCCAAGCA 7074 | || | |||||| ||||||||| ||| | | | ||||| || |||||||| Sbjct 1553592 GAAAAAATATGACAAGGAGGTAAA---GCCATTTTTGAAAAATCAGCAGGGTTCCAAGCT 1553536 Query 7075 GTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAAT 7134 | ||| | || | || ||||| |||||| || || | ||| | |||| | | || Sbjct 1553535 GACATGATTATTCTTCGATCATATGGATTGGTCTTAAGCTTTTTAATAACTTCTGCCAAC 1553476 Query 7135 TGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGT 7194 ||||| | ||||| || |||||||| | || ||| | ||| || || ||||||||| Sbjct 1553475 TGATCCACACCCTTTCCATCATAATTTGCATCACAGCCTTCATATTTCGCACCAAAATGT 1553416 Query 7195 CTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCT 7233 ||||||||||||||||| | |||||| | ||||||| || Sbjct 1553415 CTCCATTGAAACCCATACACAGGACCAAGATCACCTACT 1553377 >seq4 Length=1551466 Score = 96.9 bits (106), Expect = 4e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387 |||||| ||| | | ||| || |||| | || |||| || ||||| ||||| ||| | Sbjct 127330 GTTAAAGTTAGAATGAGAACTACTAAGGTTCCACAAATTGGAGATAAATTTGCATCTCGT 127389 Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447 || |||||||| || ||||| | ||| | || ||||||||||| || ||| Sbjct 127390 CATGGGCAAAAAGGAACTATAGGTATAACATATAGACATGAAGATATGCCATTCACTGCG 127449 Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || || ||| | |||||| | |||||||| ||||||||| |||| ||| ||||| Sbjct 127450 GAAGGAATAATTCCGGATTTAATTATTAATCCACATGCTATTCCTTCTCGTATGAC 127505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871471163600