Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascoidea_20asiatica_20[genbank_20GCA_5F001600695.1_202016-03-01] 71 sequences; 20,313,720 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq10 105 6e-18 seq8 89.7 5e-13 seq4 87.8 2e-12 >seq1 Length=2713227 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| || || || || ||||| ||||| ||||| | ||||||||| Sbjct 1439211 CCACCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATGTTATAATCAGAT 1439270 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || | ||||| || |||||||||||||||| |||||||| || Sbjct 1439271 AAAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCTGGTGGG 1439330 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||||||||| || | |||||| | || || | | || |||| || || Sbjct 1439331 ATACCTTCTTTATCTTGAATTTTGGATTTAACATTATCAATGGTATCAGAAGATTCCACT 1439390 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 || | ||||| ||||| || ||||| ||||| |||||| Sbjct 1439391 TCTAAAGTGATAGTTTTACCTGTAAGGGTTTTAACAAAG 1439429 >seq10 Length=718177 Score = 105 bits (116), Expect = 6e-18 Identities = 168/238 (71%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 94772 TTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTA 94831 |||||| | || ||||| |||| || || || || ||||| ||||| ||||| | ||| Sbjct 467978 TTTTAC-CACCACCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTA 468036 Query 94832 TAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 ||||| ||| |||| | ||| || | ||||| || |||| ||||||||||| | Sbjct 468037 TAATCAG--ATAATGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTT 468094 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 ||||||| |||||||||||||| || | |||||| || || | | ||| |||| Sbjct 468095 GATCTGGTGGAATACCTTCTTTATCTTGAATTTTACTTTTAACATTATCAATAGTATCAG 468154 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | || || ||||| || || | ||||| ||||| || ||||| Sbjct 468155 AAGATTCAACTTCTAAAGTAATTGTTTTACCTGTTAAGGTTTTAACAAAAATTTGCAT 468212 >seq8 Length=720923 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| |||| | || || || | ||| ||||| ||||| | |||||||| Sbjct 254690 CCTCCTCTTAATCTAAGAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGAT 254749 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| || | ||||| || |||| || || | ||| |||||||| ||| Sbjct 254750 AAGGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 254809 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||||||||| || || ||||| || ||| | | ||| |||| | || || Sbjct 254810 ATACCTTCTTTATCTTAGATTTTACTTTTAACGTTATCAATAGTATCAGAGGATTCAACT 254869 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 || | || || ||||| ||||| | |||||| ||||| || || Sbjct 254870 TCTAAAGTAATAGTTTTACCAGTTAAAGTTTTGACAAAAATTTG 254913 >seq4 Length=1551466 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| | || || || | ||||| || ||||| | |||||||| Sbjct 1333101 CCGCCTCTTAATCTAAGAACTAAATGAAGTGTAGACTCTTTTTGAATATTATAATCAG-- 1333158 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| ||| | ||| || | ||||||||| |||| || || | ||| ||||| |||| Sbjct 1333159 ATAAGGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATCAAACGTTGTTGATCAGGAG 1333218 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 ||||||||||||| || | ||| || | ||| || | | ||| |||| || | Sbjct 1333219 GAATACCTTCTTTATCTTGAATCTTGGACTTAACATTATCAATAGTATCAGATGATTCAA 1333278 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | || || ||||| || || | |||||| ||||| || ||||| Sbjct 1333279 CTTCTAAAGTAATTGTTTTACCTGTCAAAGTTTTAACAAAAATTTGCAT 1333327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290802141560