Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascoidea_20asiatica_20[genbank_20GCA_5F001600695.1_202016-03-01] 71 sequences; 20,313,720 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq4 132 5e-26 seq8 113 5e-20 seq10 100 3e-16 >seq4 Length=1551466 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| | |||||||| |||| ||||| || || ||||||||||| || ||||| | Sbjct 1333100 ACCGCCTCTTAATCTAAGAACTAAATGAAGTGTAGACTCTTTTTGAATATTATAATCAGA 1333159 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| | | ||||| | || || |||||| |||| | || || || || ||||| Sbjct 1333160 TAAGGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATCAAACGTTGTTGATCAGGAGG 1333219 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| |||||||| ||||| || || ||| ||| || | |||||| | || || Sbjct 1333220 AATACCTTCTTTATCTTGAATCTTGGACTTAACATTATCAATAGTATCAGATGATTCAAC 1333279 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||| | || || || ||||||||||| || ||||||||||| Sbjct 1333280 TTCTAAAGTAATTGTTTTACCTGTCAAAGTTTTAACAAAAATTTGCAT 1333327 Score = 127 bits (140), Expect = 2e-24 Identities = 159/217 (73%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 64230 TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGT 64289 |||| |||| ||||| || |||||||||||||||||||| || | | || | | | Sbjct 1333799 TAAG-ACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCAGATAAAGTTCTACCAT 1333857 Query 64290 CTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTT 64349 |||| | ||||| ||||| | || | || || || || || |||||||||||||| | Sbjct 1333858 CTTCTAATTGCTTACCGGCGAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTAT 1333917 Query 64350 CTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 |||| || ||| || ||| || | ||||||| | || ||||||| ||| | || Sbjct 1333918 CTTGGATCTTTGATTTAACATTATCAATTGTATCAGATGATTCAACTTCTAAAGTAATGG 1333977 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | || || || ||||| || ||||||||||||||||| Sbjct 1333978 TTTTACCAGTTAAAGTCTTGACGAAAATTTGCATTTT 1334014 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||||| || |||||||||||||| || ||||| | | ||| | Sbjct 1333338 AATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGATAAGGTTCTA 1333397 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || |||||| |||| | || || || || || |||||||||||| Sbjct 1333398 CCATCTTCTAATTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCT 1333457 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| |||||| || ||| || | |||||| | || ||||| | || Sbjct 1333458 TTATCTTGAATTTTTGATTTAACATTATCAATAGTATCAGATGATTCAACTTCCAAGGTA 1333517 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||| || || || |||||||| || || |||||||| Sbjct 1333518 ATGGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 1333555 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 |||||||| |||| ||||| || |||||||||||||| || || || | | || | Sbjct 1333566 AATCTAAGAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAGTCAGACAAAGTTCTA 1333625 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 ||||||| | || || || ||| |||| | || || ||||| |||||||| |||||| Sbjct 1333626 CCGTCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGAGGAATACCTTCT 1333685 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| ||||| || ||| || | ||||| | || ||||||| ||| Sbjct 1333686 TTATCTTGAATTTTACTTTTGACATTATCAATAGTATCTGAAGATTCTACTTCTAAAGTG 1333745 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||||| || || || || || || ||||||||||| Sbjct 1333746 ATTGTCTTACCAGTTAAGGTCTTGACAAAAATTTGCAT 1333783 >seq8 Length=720923 Score = 113 bits (124), Expect = 5e-20 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 |||||||| |||| ||||| || |||||||||||||| || ||||| | | ||| | Sbjct 254699 AATCTAAGAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGATAAGGTTCTT 254758 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| |||| | || || || || || ||||| |||||| Sbjct 254759 CCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCT 254818 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || |||| ||||| || || || | |||||| || || ||||||| ||| Sbjct 254819 TTATCTTAGATTTTACTTTTAACGTTATCAATAGTATCAGAGGATTCAACTTCTAAAGTA 254878 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAAT-GATACACT 64460 | || || || || |||||||| || |||||||| ||| || | || |||| ||| Sbjct 254879 ATAGTTTTACCAGTTAAAGTTTTGACAAAAATTTG-ATTATATTTATAGATATACT 254933 >seq10 Length=718177 Score = 100 bits (110), Expect = 3e-16 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||| | || |||||||||||||| || ||||| | | || | Sbjct 467995 AATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTA 468054 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| |||| | | || || || || ||||| |||||| Sbjct 468055 CCATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCT 468114 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| ||||| || ||| || | |||||| | || ||||||| ||| Sbjct 468115 TTATCTTGAATTTTACTTTTAACATTATCAATAGTATCAGAAGATTCAACTTCTAAAGTA 468174 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT--AATAAT 64452 | || || || || || ||||| || |||||||||||||| |||||| Sbjct 468175 ATTGTTTTACCTGTTAAGGTTTTAACAAAAATTTGCATTTTTAAATAAT 468223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644356565240