Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascoidea_20asiatica_20[genbank_20GCA_5F001600695.1_202016-03-01] 71 sequences; 20,313,720 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq4 111 1e-19 seq8 107 1e-18 seq29 102 6e-17 seq10 98.7 7e-16 >seq4 Length=1551466 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || ||||| | ||| ||||||||| ||||||||||| | || | |||| || Sbjct 1333347 ACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGATAAGGTTCTACCATCTTCT 1333406 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| ||| ||||||| ||||| || ||||| | || | |||||||| || Sbjct 1333407 AATTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGA 1333466 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 |||||| ||||| | | | || || | ||| || ||||| ||||| |||||| Sbjct 1333467 ATTTTTGATTTAACATTATCAATAGTATCAGATGATTCAACTTCCAAGGTAATGGTTTTA 1333526 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||||||||| || ||||| ||||| Sbjct 1333527 CCAGTTAAAGTTTTAACAAAGATTTGCAT 1333555 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || || ||||| | ||| ||||||||| |||||||| || | |||| | | || Sbjct 1333572 AGAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAGTCAGACAAAGTTCTACCGTCT 1333631 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || |||||||| || ||||||||||||| || || || | || | |||||||| || Sbjct 1333632 TCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGAGGAATACCTTCTTTATCT 1333691 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| ||| | | | | || |||| ||| || || ||||| ||||| Sbjct 1333692 TGAATTTTACTTTTGACATTATCAATAGTATCTGAAGATTCTACTTCTAAAGTGATTGTC 1333751 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| ||||| || || || || || ||||| Sbjct 1333752 TTACCAGTTAAGGTCTTGACAAAAATTTGCAT 1333783 >seq8 Length=720923 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || || ||||| | ||| ||||||||| ||||||||||| | || | | |||| Sbjct 254705 AGAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGATAAGGTTCTTCCATCT 254764 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || |||||||| || ||||||| ||||| || ||||| | || | |||||||| || Sbjct 254765 TCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCT 254824 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 | ||||| ||||| | | | || || | | ||| || || |||||||| ||| Sbjct 254825 TAGATTTTACTTTTAACGTTATCAATAGTATCAGAGGATTCAACTTCTAAAGTAATAGTT 254884 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTG 39716 ||||| ||||||||||| || || || || Sbjct 254885 TTACCAGTTAAAGTTTTGACAAAAATTTG 254913 >seq29 Length=110012 Score = 102 bits (112), Expect = 6e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 42512 ATGTTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATGA 42571 || ||||||||||| |||| ||||| ||||||| || || || ||||| | Sbjct 46251 ATATTACCTAAATCTCCAACATGTCTAATTTCATCAATTGGAGAACCATGAGTTTTATTA 46192 Query 42572 AAAGGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATGT 42631 ||||||||||||||| |||||| || ||||| ||||| || |||| ||||||| ||| Sbjct 46191 AAAGGATTAAAATGTGGACCAGCAGAAGTACAACCATTTGTATTATCACCAAATTGATGA 46132 Query 42632 ATATGAAAACC 42642 ||||||||||| Sbjct 46131 ATATGAAAACC 46121 >seq10 Length=718177 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || ||||| ||||| ||||||||| ||||||||||| | || | |||| || Sbjct 468004 ACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTACCATCTTCT 468063 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| || |||||||||| | || ||||| | || | |||||||| || Sbjct 468064 AATTGTTTACCAGCAAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGA 468123 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 ||||| ||||| | | | || || | ||| || || ||||||||||||||| Sbjct 468124 ATTTTACTTTTAACATTATCAATAGTATCAGAAGATTCAACTTCTAAAGTAATTGTTTTA 468183 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| ||||| || || || ||||| Sbjct 468184 CCTGTTAAGGTTTTAACAAAAATTTGCAT 468212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347369299416743