Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascoidea_20asiatica_20[genbank_20GCA_5F001600695.1_202016-03-01] 71 sequences; 20,313,720 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2 129 7e-25 >seq2 Length=2503681 Score = 129 bits (142), Expect = 7e-25 Identities = 246/354 (69%), Gaps = 20/354 (6%) Strand=Plus/Plus Query 154710 AGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATG 154769 |||||| | ||| | ||||| | || ||||| ||||| ||||| || ||||||| ||| Sbjct 225436 AGAAATATTTGTCTAATACCTGTTTCTGCACACGGAACAAATCCAGCAAGTGCTGCAATG 225495 Query 154770 GCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGT------AACATAGAC-AT 154822 || || | |||||||| ||||| || ||| |||||| ||| | ||| || Sbjct 225496 GCTGGCTTAAAAGTTGTTCCGGTCAAATGCCTTGAAGATGGTTCCTTAAACCTTGACGAT 225555 Query 154823 CAAAGATCTAGAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTAC 154882 || | || || ||||| ||| | | | |||| | | | || || ||||| || Sbjct 225556 TTAAAACTTAAAGCAGAAA--AATATTCTAAAAATTT-AGCCG-CA---ATAATGATCAC 225608 Query 154883 ATACCCATCTACACATGGTGTATTTGAAACTAACATTAGA-CAGATATGTAAGATC--GT 154939 || ||||| || ||||| |||||||| | || |||||| ||| || |||| || Sbjct 225609 GTATCCATCAACCTATGGTTTATTTGAACCAAAAATTAGATCAGCAAT---AGATTTGGT 225665 Query 154940 TCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACT 154999 |||| ||||| || ||||| |||||||| || |||||| | ||||| ||| | || | Sbjct 225666 TCATTTAAATGGAGGCCAGGTTTATCTTGACGGTGCAAATATGAATGCTCAGATTGGTTT 225725 Query 155000 AGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAAC 155053 | | || |||| ||| || ||||| |||||| |||| ||||||||||| Sbjct 225726 AACTTCTCCTGGTGACCTTGGAGCTGATGTTTGTCATTTAAATTTACATAAAAC 225779 Score = 127 bits (140), Expect = 2e-24 Identities = 241/349 (69%), Gaps = 13/349 (4%) Strand=Plus/Plus Query 153165 TTAAAAAATATAGCAAAAGCAAACAAAGT---AAAACCTAGTCTTATAGGTCAAGGATAC 153221 |||||||| || ||||| || ||| | |||| || | || ||| |||| || Sbjct 223852 TTAAAAAAATTATCAAAAAAGAATAAAATTTTAAAATCTT---TAATTGGTAAAGGTTAT 223908 Query 153222 TATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTGAGAATC--CTAGTTGGT 153279 ||| || ||||| || ||||| || |||| || || |||||| | |||| Sbjct 223909 TATAATACTATTACCCCTCCAGTAATTTTAAGAAAT-TTATT-AGAATCTCCCGAATGGT 223966 Query 153280 ACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCA 153339 | || |||| || || ||||||||||| || ||||| || ||||| ||| || | || | Sbjct 223967 ATACTCCTTATACGCCATATCAAGCTGAAATTTCTCAAGGTAGATTAGAATCTCTCTTAA 224026 Query 153340 ATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTATTAG 153399 ||| ||||| | || | || | || || ||||| | ||||| || ||| |||||| Sbjct 224027 ATTTTCAAACTGTAATTTCTGATTTAACTGGTTTACCTGTTGCAAATGCTTCTTTATTAG 224086 Query 153400 ATGAAGCAACTGCAGCAGCAGAAGCAATGCTATTAGCAT---ATAATTCTACAAGAGATA 153456 |||||| || || || || ||||||||| |||| | | || |||| | | | | | Sbjct 224087 ATGAAGGTACCGCTGCTGCTGAAGCAATGACATTAACTTTTCATTATTCAAAACAAAAAA 224146 Query 153457 AGAAGACTGTCATAGTTGATAAAGATATATTCCCACAGACTCTAGCAGT 153505 | || ||| || ||||||||| |||| |||||||| ||| |||| || Sbjct 224147 AAAATACTTATATTGTTGATAAAAATATTTTCCCACAAACTTTAGCTGT 224195 Score = 96.9 bits (106), Expect = 4e-15 Identities = 186/272 (68%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 153746 TGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCA 153805 |||||| ||| ||||| | ||||| || || |||| ||||| ||||| |||||||| Sbjct 224445 TGATATAGCTTTAGGTTCTTCTCAAAGATTCGGAGTTCCAATGGGTTATGGTGGTCCTCA 224504 Query 153806 TGCTGCATTCTTTGCAACAACAGACAAGTATAAG-AGAAAGATACCTGGCAGAATTGTAG 153864 |||||| || || || | | | || | |||| | || || || || ||| | || | Sbjct 224505 TGCTGCTTTTTTCGCTGTTA-AAAAAAATTTAAGTCGTAAAATGCCGGGTAGATTAGTTG 224563 Query 153865 GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924 | ||| |||||| |||||| || | | | || |||| || ||||| | Sbjct 224564 GCTTATCAAAAGATAGATTGGGTAATCCTGCTTTACGTCTTGCTTTACAAACAAGAGAAC 224623 Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTA 153984 | ||||| | ||||| |||||||| ||| || ||||| ||||| || | | |||| Sbjct 224624 AACATATTAAAAGAGAAAAAGCAACTTCTAATATATGCACTGCTCAAGCTTTATTAGCTA 224683 Query 153985 ATATGTCTGGATTCTATGCAGCATATCATGGT 154016 ||||| ||| | ||||| | ||||||||| Sbjct 224684 ATATGGCTGCTTCTTATGCTGTTTATCATGGT 224715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579212285948640