Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascoidea_20asiatica_20[genbank_20GCA_5F001600695.1_202016-03-01] 71 sequences; 20,313,720 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 >seq2 Length=2503681 Score = 107 bits (118), Expect = 2e-18 Identities = 164/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 157951 TGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTA 158010 ||||| || |||| || || ||||||||||| || ||||| || ||||| ||| || | Sbjct 223963 TGGTATACTCCTTATACGCCATATCAAGCTGAAATTTCTCAAGGTAGATTAGAATCTCTC 224022 Query 158011 TTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAACGCATCTCTA 158070 || |||| ||||| | || | || | || || |||| | ||||| || ||| || Sbjct 224023 TTAAATTTTCAAACTGTAATTTCTGATTTAACTGGTTTACCTGTTGCAAATGCTTCTTTA 224082 Query 158071 TTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTGTTAGCAT---ATAATTCTACAAGA 158127 |||||||||| || || || || ||||||||| ||| | | || |||| | | | Sbjct 224083 TTAGATGAAGGTACCGCTGCTGCTGAAGCAATGACATTAACTTTTCATTATTCAAAACAA 224142 Query 158128 GATAAGAAGACTGTCATAGTTGATCAAGATATATTTCCACAGACTCTAGCAGT 158180 | || || ||| || |||||| || |||| || ||||| ||| |||| || Sbjct 224143 AAAAAAAATACTTATATTGTTGATAAAAATATTTTCCCACAAACTTTAGCTGT 224195 Score = 91.5 bits (100), Expect = 2e-13 Identities = 185/272 (68%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 158421 TGACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCA 158480 ||| || ||| ||||| | ||||| || || |||| ||||| || || |||||||| Sbjct 224445 TGATATAGCTTTAGGTTCTTCTCAAAGATTCGGAGTTCCAATGGGTTATGGTGGTCCTCA 224504 Query 158481 TGCTGCATTCTTTGCAACAACAGACAAGTATAAG-AGAAAGATACCTGGCAGAATTGTAG 158539 |||||| || || || | | | || | |||| | || || || || ||| | || | Sbjct 224505 TGCTGCTTTTTTCGCTGTTA-AAAAAAATTTAAGTCGTAAAATGCCGGGTAGATTAGTTG 224563 Query 158540 GTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 158599 | ||| |||||| |||||| || | | | || |||| || ||||| | Sbjct 224564 GCTTATCAAAAGATAGATTGGGTAATCCTGCTTTACGTCTTGCTTTACAAACAAGAGAAC 224623 Query 158600 AGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTA 158659 | ||||| | |||||| |||||||| ||| || ||||| || ||||| | | |||| Sbjct 224624 AACATATTAAAAGAGAAAAAGCAACTTCTAATATATGCACTGCTCAAGCTTTATTAGCTA 224683 Query 158660 ATATGTCTGGGTTCTATGCAGCATATCATGGT 158691 ||||| ||| | ||||| | ||||||||| Sbjct 224684 ATATGGCTGCTTCTTATGCTGTTTATCATGGT 224715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588050678104560