Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascoidea_20asiatica_20[genbank_20GCA_5F001600695.1_202016-03-01] 71 sequences; 20,313,720 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq1 104 3e-17 seq5 87.8 2e-12 >seq1 Length=2713227 Score = 104 bits (114), Expect = 3e-17 Identities = 117/154 (76%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 116753 CCTTGGAAATTGAAAGAAGAACTTAAACATTTTCAAAATGTTACGACTTCTACTCAAGAT 116812 || |||| ||||||||||||| | ||| ||||| || || || | ||| || || Sbjct 803838 CCATGGAGATTGAAAGAAGAAATGAAATATTTTGTTAAAGTAACTTCAAATACAAAA-AT 803780 Query 116813 AGTAG-TaaaaaaaaTGCTGTTATTATGGGTCGAAAAACATGGGATAGTATTCCtaataa 116871 | || ||| |||||||| |||||||||||| ||||||| ||||| |||||||| | ||| Sbjct 803779 AAAAGATAATAAAAATGCAGTTATTATGGGTAGAAAAACTTGGGAAAGTATTCCAATTAA 803720 Query 116872 atttaaaccattaaaaaatcgaataaatataata 116905 |||| ||||||| ||| |||| ||| | ||| Sbjct 803719 ATTTCGTCCATTAATGAATAGAATCAATGTTATA 803686 >seq5 Length=1213637 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/149 (75%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 194241 ACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCTCAAAAAGGAACTTGTGGTATGA 194299 ||| ||| | || |||||||||| ||| || |||| ||||||||| ||||||||| | Sbjct 903004 ACCAGAACTTGGAGATAAATTTTCTTCAAGACATGGA-CAAAAAGGAGTTTGTGGTATAA 903062 Query 194300 TTTATTCA-CAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATC 194358 || || | ||||||||| | ||||||| | ||||| ||||||||||||||| Sbjct 903063 TT-ATAAATCAAGAAGATTTACCATTTAATGATGATGGTATATCACCAGATATTATTATG 903121 Query 194359 AATCCAAATTGTATTCCGTCCAGAATGAC 194387 |||||| || || |||| || | ||||| Sbjct 903122 AATCCACATGGTTTTCCATCACGTATGAC 903150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632489038665480