Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascoidea_20asiatica_20[genbank_20GCA_5F001600695.1_202016-03-01] 71 sequences; 20,313,720 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq5 102 1e-16 seq2 91.5 2e-13 seq4 87.8 2e-12 seq1 86.0 8e-12 seq3 84.2 3e-11 >seq5 Length=1213637 Score = 102 bits (112), Expect = 1e-16 Identities = 115/149 (77%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 193445 ACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGGTATGA 193503 ||| ||| | || |||||||||| |||| || |||| | |||||||| ||||||||| | Sbjct 903004 ACCAGAACTTGGAGATAAATTTTCTTCAAGACATGGAC-AAAAAGGAGTTTGTGGTATAA 903062 Query 193504 TTTATTCA-CAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATT 193562 || || | ||||||||| | ||||||| | | ||||| ||||||||||||||| Sbjct 903063 TT-ATAAATCAAGAAGATTTACCATTTAATGATGATGGTATATCACCAGATATTATTATG 903121 Query 193563 AATCCAAATTGTATTCCATCCAGAATGAC 193591 |||||| || || ||||||| | ||||| Sbjct 903122 AATCCACATGGTTTTCCATCACGTATGAC 903150 >seq2 Length=2503681 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 51852 GTTAAAAGACAATTGATGGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCAT 51911 ||| || | || || |||||| |||| ||| || || || | ||||| || | ||| Sbjct 1498020 GTTGAACGTCATTTAATGGATAATGATCCTGTTCTTTTTAACCGTCAACCTTCATTACAT 1498079 Query 51912 AAAGCTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAAT 51971 ||| || ||| | || ||| ||| | ||| | ||| |||| ||| ||| Sbjct 1498080 AAAATGTCCATGATGTGCCATAGAGTAAAAGTAATGCCATTTTCAACTTTTAGAATAAAT 1498139 Query 51972 TTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTT 52031 || || | || | | |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1498140 TTATCTGTCACAACTCCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTACATGTT 1498199 Query 52032 CCTCAATC 52039 || ||||| Sbjct 1498200 CCACAATC 1498207 >seq4 Length=1551466 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 193797 TTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCT 193856 ||| | || ||||| |||||||| | | | |||||||| | |||||||| || ||| Sbjct 127699 TTTTTCGGCCCAACATATTATCAAAGATTAAGGCATATGGTGGATGATAAAATCCACGCT 127758 Query 193857 AGAAGTCATGGACAAGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGT 193916 ||| |||| | || | |||| ||||||| | |||||||| || | Sbjct 127759 AGAGCAAGAGGACCATTGCAAATTTTAACAAGACAACCTGTTGAAGGTCGTTCAAGAGAT 127818 Query 193917 GGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGCTACTCAA 193976 || || ||||||||||| || ||||||| ||| ||||| ||| |||||| | || | Sbjct 127819 GGTGGATTAAGATTTGGGGAGATGGAGAGAGATTGTATGATAGCTCATGGAACAGCTGCA 127878 Query 193977 TTCTTGAATGAAAGAATG 193994 || ||||| |||||| || Sbjct 127879 TTTTTGAAAGAAAGATTG 127896 >seq1 Length=2713227 Score = 86.0 bits (94), Expect = 8e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 116445 CCTTGGAAATTAAAAGAAGAACTTAAACATTTTCAAGATGTTACGACTTCTACCCAAGAT 116504 || |||| ||| ||||||||| | ||| ||||| | || || | ||| || || Sbjct 803838 CCATGGAGATTGAAAGAAGAAATGAAATATTTTGTTAAAGTAACTTCAAATACAAAA-AT 803780 Query 116505 AGTAG-TaaaaaaaaCGCTGTTATTATGGGTCGGAAAACATGGGATAGTATTCCTAATAA 116563 | || ||| ||||| || |||||||||||| | ||||| ||||| |||||||| | ||| Sbjct 803779 AAAAGATAATAAAAATGCAGTTATTATGGGTAGAAAAACTTGGGAAAGTATTCCAATTAA 803720 Query 116564 ATTTAAACCATTAAAAAATCGAATAAATATAATA 116597 |||| ||||||| ||| |||| ||| | ||| Sbjct 803719 ATTTCGTCCATTAATGAATAGAATCAATGTTATA 803686 >seq3 Length=2066014 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/152 (72%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 51891 AATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCA 51950 ||| | |||||||| | ||||||||||||||| || | ||||| || || Sbjct 715347 AATCGTCAACCAACTTTACATAAAGCTTCTATGATGGGTCACAGAGTTAGGGTTTTGGCA 715406 Query 51951 GT---AAAAACATTTAAAATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGAT 52007 | ||||||| | | ||| ||| |||| ||| || |||||||||||||||||| Sbjct 715407 GGTCAAAAAACAATCAGAATTCATTATGCTAATACTGGTGCTTATAATGCTGATTTTGAT 715466 Query 52008 GGGGATGAAATGAATTTACATGTTCCTCAATC 52039 || |||||||||||| | ||| |||| ||||| Sbjct 715467 GGTGATGAAATGAATATGCATTTTCCACAATC 715498 Score = 82.4 bits (90), Expect = 1e-10 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 51988 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAA 52037 |||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 345826 CATATAATGCTGATTTTGATGGTGATGAAATGAATTTACATGTTCCACAA 345875 Score = 82.4 bits (90), Expect = 1e-10 Identities = 129/181 (71%), Gaps = 8/181 (4%) Strand=Plus/Plus Query 114834 TACTTATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTAAGAATGGAATTGAAGTAGG 114893 ||| ||||| || |||| ||||||| |||||| |||| ||||||||| || Sbjct 1455460 TACATATGGTAGAGTTGCACCAAGATCGGGTTTAGCAGTTAAAAATGGAATTACCACTGG 1455519 Query 114894 AGCAGGTGTTATCGATGAAGATTATCAAG-ATAATTTAATGGTTATTTTACATAACCATT 114952 || || ||||| |||| ||||||| || | || |||| || ||||| || | || Sbjct 1455520 TGCTGGAGTTATTGATGCAGATTATAGAGGAGAAGTTAAAA-TTGTTTTATTCAATCTTT 1455578 Query 114953 CAGATGTTGATTTTAAAATTGAAGTTAAAG---ATAGAATTGCTCAATTAATTGTTGAAA 115009 ||||| || ||||||||| || |||| |||||||||| |||||| || | |||| Sbjct 1455579 CAGATAAAGAATTTAAAATTAAA---AAAGGTGATAGAATTGCACAATTAGTTTTAGAAA 1455635 Query 115010 A 115010 | Sbjct 1455636 A 1455636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635177036279880