Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascoidea_20asiatica_20[genbank_20GCA_5F001600695.1_202016-03-01] 71 sequences; 20,313,720 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq5 105 9e-18 seq1 104 3e-17 seq3 84.2 3e-11 >seq5 Length=1213637 Score = 105 bits (116), Expect = 9e-18 Identities = 418/641 (65%), Gaps = 35/641 (5%) Strand=Plus/Plus Query 201544 TTAAAATTGTTATTGGTCAGATACGTATACCAGAAATTGGAGATAAATTTTGTTCTGGA- 201602 ||||| || | || | || | | | | ||||||| ||||||||||||||| ||| || Sbjct 902976 TTAAACTTTTAATGAGACAAACAAGAAGACCAGAACTTGGAGATAAATTTTCTTCAAGAC 903035 Query 201603 ATGGCCCAAAAAGGAACTTGTGGTATGATTTATGCA-CAAGAAGATATGCCGTTTACACA 201661 |||| ||||||||| ||||||||| | |||| | ||||||||| | || |||| | Sbjct 903036 ATGG-ACAAAAAGGAGTTTGTGGTAT-AATTATAAATCAAGAAGATTTACCATTTAATGA 903093 Query 201662 ATCGGGTATGACCCCGGATATTATAATCAATCCAAATTGTATACCATCAAGAATGACCAT 201721 ||||| | || |||||||| || |||||| || || | |||||| | ||||| | Sbjct 903094 TGATGGTATATCACCAGATATTATTATGAATCCACATGGTTTTCCATCACGTATGACAGT 903153 Query 201722 AAATCAAATAATTGCAACTGTTAT-GGGTAAATTATACCTAACGAATCCACAATCTAAAT 201780 | |||| ||| || | ||| |||||| | | |||| || || Sbjct 903154 TGGTAAAATGCTTG-AATTAATATCAGGTAAAGCAGGGGTTTTGAAT------GGTACAT 903206 Query 201781 TTAAACAAGGTAATCCAT-TTATGGAGAATTCAAGCACTATTTTAAATGAATTATGTGAT 201839 | || | |||| ||| || ||||| || | | ||| | || ||||| | Sbjct 903207 TAGAATATGGTA---CATGTTTTGGAGGAT-------CAAAATTAGAAGA--TATGTCAA 903254 Query 201840 GAACTT--ACAAAACATGGATTTGACTCGACAGGAGGAGAAACAATGTATTGTGGTTTTA 201897 || || | | | |||||| | |||| ||| | | |||| ||| ||| Sbjct 903255 AAATTTTAATTGATAAAGGATTTAGTTATTCAGGTAAAGATCAATTATATTCAGGTATTA 903314 Query 201898 CCGGAAGAAAAATTCAAAGTA-AAATTTTTATAGGCCCAACATACTATCATCGTCTTAAA 201956 | || |||| || ||| | | || ||| | || |||| || ||||| | ||| Sbjct 903315 CTGG-AGAATGTTTACAAGCATATATATTTTTTGGGCCAATTTATTATCAAAAATTAAAA 903373 Query 201957 CATATGGTTAAGGATAAAATGCATGCGAG---AAGTCATGGTCAAGTAACAACATTACAT 202013 |||||||||| |||||| |||||||| || ||| | | |||| | || ||| Sbjct 903374 CATATGGTTATGGATAAGATGCATGCAAGAGCAAG--AGGACCAAG-AGCAGTTTTAACA 903430 Query 202014 CGTCAACCAAACTGTGGTCGGTCCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAA 202073 | ||||||| ||| | || ||| ||||||||||| ||||||||||||| | Sbjct 903431 AGACAACCAACAGAAGGTAGAAGTAGAGATGGAGGATTAAGATTAGGAGAAATGGAAAGA 903490 Query 202074 GATTGTATTTTGGTTCATGGGGCCACACAATTTTTAAATGAAAGAATGTTTTTGTATTCA 202133 |||||| || | | |||| || ||||||| ||| |||||| | | || | ||| Sbjct 903491 GATTGTGTTATAGCATATGGAGCATCACAATTATTATTAGAAAGATTAATGTTATCATCA 903550 Query 202134 GATCCTTTTCAAATCGATGTGTGTACAAATTGTGGAATGAT 202174 ||| |||| | | ||||| |||| || |||||| |||| Sbjct 903551 GATGTTTTTGATGTTGATGTTTGTAATAAATGTGGATTGAT 903591 >seq1 Length=2713227 Score = 104 bits (114), Expect = 3e-17 Identities = 117/154 (76%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 122012 CCATGGAAATTACAAGAAGAACTTAAACATTTTCAAGAAGTAACAACTTGTACCCAAGAT 122071 ||||||| ||| |||||||| | ||| ||||| ||||||| | ||| || || Sbjct 803838 CCATGGAGATTGAAAGAAGAAATGAAATATTTTGTTAAAGTAACTTCAAATACAAAA-AT 803780 Query 122072 AAAAC-TaaaaaaaaTGCTGTTATTATGGGTCGAAAAACTTGGGATAGTATTCCTGATAA 122130 |||| ||| |||||||| |||||||||||| ||||||||||||| |||||||| ||| Sbjct 803779 AAAAGATAATAAAAATGCAGTTATTATGGGTAGAAAAACTTGGGAAAGTATTCCAATTAA 803720 Query 122131 ATTTAAACCATTAAAAAATCGAGTAAATATAATA 122164 |||| ||||||| ||| || | ||| | ||| Sbjct 803719 ATTTCGTCCATTAATGAATAGAATCAATGTTATA 803686 >seq3 Length=2066014 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 120195 ACTTATGGTAGAATTGCTTCAAGATCTGGTTTATCATTTAAACATGGGATTGAAGTAGGA 120254 || ||||||||| |||| ||||||| |||||| || ||||| |||| ||| || Sbjct 1455461 ACATATGGTAGAGTTGCACCAAGATCGGGTTTAGCAGTTAAAAATGGAATTACCACTGGT 1455520 Query 120255 GCGGGTGTTATTGATGAAGATTATCCCAATGA-GTTAATGATTATTTTGCACAACCATTC 120313 || || |||||||||| ||||||| || ||||| ||| |||| ||| | ||| Sbjct 1455521 GCTGGAGTTATTGATGCAGATTATAGAGGAGAAGTTAAA-ATTGTTTTATTCAATCTTTC 1455579 Query 120314 AGACACCGATTTCAAAGTTGAAGTAGGGGATAGAATTGCCCAA 120356 ||| | || || ||| || || ||| ||||||||||| ||| Sbjct 1455580 AGATAAAGAATTTAAAATTAAAAAAGGTGATAGAATTGCACAA 1455622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655279418439000