Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascoidea_20asiatica_20[genbank_20GCA_5F001600695.1_202016-03-01] 71 sequences; 20,313,720 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq1 100 4e-16 seq2 93.3 5e-14 seq4 89.7 6e-13 seq5 87.8 2e-12 seq3 84.2 3e-11 >seq1 Length=2713227 Score = 100 bits (110), Expect = 4e-16 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 116936 CCTTGGAAATTGAAAGAAGAACTTAAACATTTTCAAGATGTTACGACTTCTACTCAAGAT 116995 || |||| ||||||||||||| | ||| ||||| | || || | ||| || || Sbjct 803838 CCATGGAGATTGAAAGAAGAAATGAAATATTTTGTTAAAGTAACTTCAAATACAAAA-AT 803780 Query 116996 AGTAG-TaaaaaaaaTGCTGTTATTATGGGTCGAAAAACATGGGATAGTATTCCTAATAA 117054 | || ||| |||||||| |||||||||||| ||||||| ||||| |||||||| | ||| Sbjct 803779 AAAAGATAATAAAAATGCAGTTATTATGGGTAGAAAAACTTGGGAAAGTATTCCAATTAA 803720 Query 117055 ATTTAAACCATTAAAAAATCGAATAAATATAATA 117088 |||| ||||||| ||| |||| ||| | ||| Sbjct 803719 ATTTCGTCCATTAATGAATAGAATCAATGTTATA 803686 >seq2 Length=2503681 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 50406 AACATTTAAAATGAATTTAGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGA 50465 ||| |||| ||| |||||| || | || | | |||||||||||||||||||| ||||| Sbjct 1498124 AACTTTTAGAATAAATTTATCTGTCACAACTCCTTATAATGCTGATTTTGATGGAGATGA 1498183 Query 50466 AATGAATTTACATGTTCCTCAATC 50489 |||||||||||||||||| ||||| Sbjct 1498184 AATGAATTTACATGTTCCACAATC 1498207 >seq4 Length=1551466 Score = 89.7 bits (98), Expect = 6e-13 Identities = 202/294 (69%), Gaps = 11/294 (4%) Strand=Plus/Plus Query 192382 TTATACCATTTTCCGAT-AGAACACAATCTGCTCGAAACTGTTTTTATACTTCTATGGTT 192440 |||| |||||| | ||| | ||| ||||| |||| || | | | || |||||| | Sbjct 126704 TTATTCCATTTCCGGATCATAAC-CAATCCCCTCGTAATACATATCAATCTGCTATGGGT 126762 Query 192441 AAACAAGCCATTGGGTTTATTCCTTGCCAC----AACTTAAAAACGGAAACAGTCTCTCA 192496 |||||||| || ||| | ||| | ||| || ||| || ||| || | || | Sbjct 126763 AAACAAGCTATGGGGGT-ATTTTTAACCAATTATAATGTAAGAATGGATACGATGGCTAA 126821 Query 192497 TACATTAAATTATCCACAAAAACCACTTGTTACCACA-GATAT-TGCAAAATTTAATAAA 192554 || ||| ||||||| || ||||| | | || ||| | | | || || || ||| || Sbjct 126822 TATATTGTATTATCCTCAGAAACCTTTAGCAACAACACGTTCTATGGAATATCTAA-AAT 126880 Query 192555 TTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGCTAT 192614 | ||| |||| || ||| ||||| |||||||| || || || ||| |||| ||| Sbjct 126881 TCAGAGAATTA-CCTGCTGGACAGAATGCAATTGTTGCAATTGCATGTTATTCTGGTTAT 126939 Query 192615 AACCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTT 192668 ||||||||||| || ||| | ||| || |||| ||||| ||||| |||||| Sbjct 126940 AACCAAGAAGATTCGATGATTATGAATCAAACTTCAATTGATAGAGGGTTATTT 126993 >seq5 Length=1213637 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/149 (75%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 192998 ACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGGTATGA 193056 ||| ||| | || |||||||||| ||| || |||| | |||||||| ||||||||| | Sbjct 903004 ACCAGAACTTGGAGATAAATTTTCTTCAAGACATGGAC-AAAAAGGAGTTTGTGGTATAA 903062 Query 193057 TTTATTCA-CAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATT 193115 || || | ||||||||| | ||||||| | ||||| ||||||||||||||| Sbjct 903063 TT-ATAAATCAAGAAGATTTACCATTTAATGATGATGGTATATCACCAGATATTATTATG 903121 Query 193116 AATCCAAATTGTATTCCGTCCAGAATGAC 193144 |||||| || || |||| || | ||||| Sbjct 903122 AATCCACATGGTTTTCCATCACGTATGAC 903150 >seq3 Length=2066014 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/152 (72%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 50341 AATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCA 50400 ||| | |||||||| | ||||||||||||||| || | ||||| || || Sbjct 715347 AATCGTCAACCAACTTTACATAAAGCTTCTATGATGGGTCACAGAGTTAGGGTTTTGGCA 715406 Query 50401 GT---AAAAACATTTAAAATGAATTTAGCTATGACTAAAGCATATAATGCTGATTTTGAT 50457 | ||||||| | | ||| ||| |||| ||| || |||||||||||||||||| Sbjct 715407 GGTCAAAAAACAATCAGAATTCATTATGCTAATACTGGTGCTTATAATGCTGATTTTGAT 715466 Query 50458 GGGGATGAAATGAATTTACATGTTCCTCAATC 50489 || |||||||||||| | ||| |||| ||||| Sbjct 715467 GGTGATGAAATGAATATGCATTTTCCACAATC 715498 Score = 82.4 bits (90), Expect = 1e-10 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 50438 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAA 50487 |||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 345826 CATATAATGCTGATTTTGATGGTGATGAAATGAATTTACATGTTCCACAA 345875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628530642178560