Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascoidea_20asiatica_20[genbank_20GCA_5F001600695.1_202016-03-01] 71 sequences; 20,313,720 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq10 214 4e-50 seq4 214 4e-50 seq1 199 8e-46 seq8 181 2e-40 seq13 96.9 7e-15 seq3 86.0 1e-11 >seq10 Length=718177 Score = 214 bits (236), Expect = 4e-50 Identities = 198/247 (80%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 82573 TTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATAT 82632 ||| | ||| ||| ||||| || | | |||||| || | ||| |||||||| || |||| Sbjct 467976 TTTTTTACC-ACCACCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATAT 468034 Query 82633 TATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTT 82692 |||||||||||| ||||||| ||||||| |||||| |||||||| |||| |||||||| Sbjct 468035 TATAATCAGATAATGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATTAATCTTTGTT 468094 Query 82693 GATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT-ACATTTTCAATCGTATCA 82751 ||||||| || || ||||| ||||||||||| ||| ||||| ||||| ||||| |||||| Sbjct 468095 GATCTGGTGGAATACCTTCTTTATCTTGAAT-TTTACTTTTAACATTATCAATAGTATCA 468153 Query 82752 TTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||| ||||| ||||| || || || ||||| || || || ||||| || |||||| Sbjct 468154 GAAGATTCAACTTCTAAAGTAATTGTTTTACCTGTTAAGGTTTTAACAAAAATTTGCATT 468213 Query 82812 ATTATAT 82818 ||| || Sbjct 468214 TTTAAAT 468220 >seq4 Length=1551466 Score = 214 bits (236), Expect = 4e-50 Identities = 187/230 (81%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | |||||||| || ||||| |||||||| || |||||||| |||| Sbjct 1333555 TACCACCTCTTAATCTAAGAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAGTCAG 1333614 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||||||||||||||| |||||| |||||||| |||| | |||||| ||||||| Sbjct 1333615 ACAAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGAG 1333674 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTT-ACATTTTCAATCGTATCATTAGGTTCT 82760 | || ||||| ||||||||||| ||| ||||| ||||| ||||| ||||| || |||| Sbjct 1333675 GAATACCTTCTTTATCTTGAAT-TTTACTTTTGACATTATCAATAGTATCTGAAGATTCT 1333733 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||||| || ||||| || || || ||||| ||||| || ||||| Sbjct 1333734 ACTTCTAAAGTGATTGTCTTACCAGTTAAGGTCTTGACAAAAATTTGCAT 1333783 Score = 203 bits (224), Expect = 6e-47 Identities = 186/235 (79%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 |||| |||| ||||| || | |||||||| || || ||||| ||||| || ||||||| Sbjct 1333093 ATCAATTACCGCCTCTTAATCTAAGAACTAAATGAAGTGTAGACTCTTTTTGAATATTAT 1333152 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 ||||||||| ||||||| ||||||| ||||||||| ||||| || | | |||||||| Sbjct 1333153 AATCAGATAAGGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATCAAACGTTGTTGAT 1333212 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 | ||||| || ||||| |||||||||||||| | || ||||| ||||| |||||| | Sbjct 1333213 CAGGAGGAATACCTTCTTTATCTTGAATCTTGGACTTAACATTATCAATAGTATCAGATG 1333272 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| ||||| ||||| || || || |||||||| || || ||||| || ||||| Sbjct 1333273 ATTCAACTTCTAAAGTAATTGTTTTACCTGTCAAAGTTTTAACAAAAATTTGCAT 1333327 Score = 201 bits (222), Expect = 2e-46 Identities = 182/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | | |||||| || ||||| |||||||| || ||||||||||||| Sbjct 1333327 TACCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAG 1333386 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| ||||||| ||||||| ||||||||| ||||| || | | |||||||||||| | Sbjct 1333387 ATAAGGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGTG 1333446 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| ||||||||||| |||| ||| ||||| ||||| |||||| | ||| | Sbjct 1333447 GAATTCCTTCTTTATCTTGAATTTTTGATTTAACATTATCAATAGTATCAGATGATTCAA 1333506 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || || || || || || || ||||| || ||||| Sbjct 1333507 CTTCCAAGGTAATGGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 1333555 Score = 181 bits (200), Expect = 2e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| || ||||| |||||||| || || || || ||||||| | ||||||| |||||| Sbjct 1333803 ACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCAGATAAAGTTCTACCATCTTCT 1333862 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||| || || || ||||||| | |||||||||||| || |||||||| |||||||| Sbjct 1333863 AATTGCTTACCGGCGAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGG 1333922 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||||| ||| ||||| ||||| |||||| | ||| ||||| ||||| || || || Sbjct 1333923 ATCTTTGATTTAACATTATCAATTGTATCAGATGATTCAACTTCTAAAGTAATGGTTTTA 1333982 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || ||||| || || || |||||| Sbjct 1333983 CCAGTTAAAGTCTTGACGAAAATTTGCATT 1334012 >seq1 Length=2713227 Score = 199 bits (220), Expect = 8e-46 Identities = 176/220 (80%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | | |||||| || | ||| |||||||| || || |||||||||| Sbjct 1439209 TACCACCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATGTTATAATCAG 1439268 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | |||| || ||||||| |||||| ||||||||||||| ||||||||||||||| | Sbjct 1439269 ATAAAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCTGGTG 1439328 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| || | ||| ||||| ||||| |||||| || ||| | Sbjct 1439329 GGATACCTTCTTTATCTTGAATTTTGGATTTAACATTATCAATGGTATCAGAAGATTCCA 1439388 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 |||| ||||| || || || ||||| | || || ||||| Sbjct 1439389 CTTCTAAAGTGATAGTTTTACCTGTAAGGGTTTTAACAAA 1439428 >seq8 Length=720923 Score = 181 bits (200), Expect = 2e-40 Identities = 186/240 (78%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | |||||||| || ||||| |||||||| || ||||||||||||| Sbjct 254688 TACCTCCTCTTAATCTAAGAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAG 254747 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| |||| || ||||||| |||||| |||||||| || | | |||||||||||| | Sbjct 254748 ATAAGGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTG 254807 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTT-ACATTTTCAATCGTATCATTAGGTTCT 82760 | || ||||| ||||||| || ||| ||||| || || ||||| |||||| | ||| Sbjct 254808 GAATACCTTCTTTATCTTAGAT-TTTACTTTTAACGTTATCAATAGTATCAGAGGATTCA 254866 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTT 82820 ||||| ||||| || || || || || || || || ||||| || || ||||||||| Sbjct 254867 ACTTCTAAAGTAATAGTTTTACCAGTTAAAGTTTTGACAAAAATTTG----ATTATATTT 254922 >seq13 Length=441995 Score = 96.9 bits (106), Expect = 7e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 143940 ATTTATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCAGTCTTGCAT 143999 |||| | |||||||||||| ||| || ||||| || | | ||||| || || ||| Sbjct 103910 ATTTGGAGAGATAAAGATGAATGGTTAACATGGAATTCAAGATCTGATCCTGTTTTACAT 103969 Query 144000 ATAGAACTTAGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTAACAGCAAATACGTTA 144059 |||||| | || |||||||||||| |||| || | || || ||| | |||||||| ||| Sbjct 103970 ATAGAATTAAGAAGATGGGCTGATATTTTAGTTGTTGCTCCATTATCTGCAAATACTTTA 104029 Query 144060 GCAAAAATAGCCAATGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGAT 144119 | ||||| | ||| | || ||||||||| | ||| | | | ||||| ||| || Sbjct 104030 TCTAAAATTTCATTAGGTTTGTGTGATAATTTAATTACAAATGTTATTAGAGCTTGGAAT 104089 Query 144120 A 144120 | Sbjct 104090 A 104090 >seq3 Length=2066014 Score = 86.0 bits (94), Expect = 1e-11 Identities = 231/344 (67%), Gaps = 16/344 (5%) Strand=Plus/Minus Query 50708 CTATTTTTTCGAATATGATTTGAGCTATTCTATCACCCTTGGATACATTAAATTGTGTAG 50767 |||||||||| || | | ||| || ||||||||||| || | ||||||| | | Sbjct 1455641 CTATTTTTTCTAAAACTAATTGTGCAATTCTATCACCTTTTTTAATTTTAAATTCTTT-- 1455584 Query 50768 AACCGAA--ATTAAATAATAGAACACTTACGTTACCTCTATAGTCTGAGTCAATTACACC 50825 | | ||| ||| ||||| | || | || | |||||||| |||| ||||| || || Sbjct 1455583 ATCTGAAAGATTGAATAAAACAATTTTAACTTCTCCTCTATAATCTGCATCAATAACTCC 1455524 Query 50826 AGCACCTACGTCTATAAAATAATTATAAGCAAGCCCTGATCTAGGAGCTATTCTACCGTA 50885 |||||| | || || ||| || | || ||||| || || | |||||| || Sbjct 1455523 AGCACCAGTGGTAATTCCATTTTTAACTGCTAAACCCGATCTTGGTGCAACTCTACCATA 1455464 Query 50886 -GTATCCATTAGGTATTTTTATAATTATATCTGTTTTTATTAATTCCTTATCCAT----A 50940 ||| ||| | |||| | || ||| ||||||| || | ||||||| ||| | | Sbjct 1455463 TGTA-CCAATTGGTACAATAATTGTTAAATCTGTTGATA-TCATTCCTTGTCCTTTGGCA 1455406 Query 50941 GGTTCTATTACATAATCATACGCGCTATATAAGTCATAACCAGCTGAATAACGAG-TCTG 50999 ||| || | ||| || ||| |||||| |||||||| ||||| | || || Sbjct 1455405 GGTATTAATCCATCCTCTGACG---AATATAAATCATAACCTGCTGATAATTCAGATCCT 1455349 Query 51000 TTTATATGGTAACTTAGCCCTTTCAGAAATTTTAAATACTGTTA 51043 ||| | ||||||| | || ||||||| ||||||||| | ||| Sbjct 1455348 TTTGT-TGGTAACGTTGCATTTTCAGATCTTTTAAATATTTTTA 1455306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826306844069