Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascoidea_20asiatica_20[genbank_20GCA_5F001600695.1_202016-03-01] 71 sequences; 20,313,720 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 8e-14 seq1 91.5 3e-13 seq10 89.7 9e-13 seq4 89.7 9e-13 >seq13 Length=441995 Score = 93.3 bits (102), Expect = 8e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 142959 ATTTATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCAT 143018 |||| | |||||||||||| ||| || ||||| || | | ||||| || || ||| Sbjct 103910 ATTTGGAGAGATAAAGATGAATGGTTAACATGGAATTCAAGATCTGATCCTGTTTTACAT 103969 Query 143019 ATAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTA 143078 |||||| | || |||||||| ||| |||| || | || || ||| | |||||||| ||| Sbjct 103970 ATAGAATTAAGAAGATGGGCTGATATTTTAGTTGTTGCTCCATTATCTGCAAATACTTTA 104029 Query 143079 GCAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGAT 143138 | ||||| | ||| | || ||||||||| | ||| | | | ||||| ||| || Sbjct 104030 TCTAAAATTTCATTAGGTTTGTGTGATAATTTAATTACAAATGTTATTAGAGCTTGGAAT 104089 Query 143139 A 143139 | Sbjct 104090 A 104090 >seq1 Length=2713227 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/132 (74%), Gaps = 11/132 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || || ||||||||||||| |||||| | |||||||| ||| Sbjct 1439245 ATTCTTTTTGAATGTTATAATCAGATAAAGTTCTTCCATCTTCTAATTGTTTACCAGCAA 1439304 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 |||||| |||||||||| |||| | || |||| ||||||||||| || | ||| | || Sbjct 1439305 AGATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATTTTGGATTTAACAT 1439364 Query 81760 TTTCAATCGTAT 81771 | ||||| |||| Sbjct 1439365 TATCAATGGTAT 1439376 >seq10 Length=718177 Score = 89.7 bits (98), Expect = 9e-13 Identities = 100/133 (75%), Gaps = 13/133 (10%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || |||||||||||||||| ||||||| |||||||| ||| Sbjct 468020 ATTCTTTTTGAATATTATAATCAGATAATGTTCTACCATCTTCTAATTGTTTACCAGCAA 468079 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTT-ATA 81758 | |||| |||||||||| |||| | || |||| ||||||||||| ||| ||||| | | Sbjct 468080 AAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAAT-TTTACTTTTAACA 468138 Query 81759 TTTTCAATCGTAT 81771 || ||||| |||| Sbjct 468139 TTATCAATAGTAT 468151 >seq4 Length=1551466 Score = 89.7 bits (98), Expect = 9e-13 Identities = 102/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||| || || |||||||||||||||| ||||||| |||||||| Sbjct 1333356 AGAGTTGATTCTTTTTGAATATTATAATCAGATAAGGTTCTACCATCTTCTAATTGTTTT 1333415 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || | | ||||||| |||| | ||| |||| ||||||||||| |||| | Sbjct 1333416 CCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTTGAT 1333475 Query 81753 TTTATATTTTCAATCGTAT 81771 || | ||| ||||| |||| Sbjct 1333476 TTAACATTATCAATAGTAT 1333494 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/140 (74%), Gaps = 13/140 (9%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||| || || |||||||| ||||| | |||||||| ||||||||| Sbjct 1333584 AGAGTTGATTCTTTTTGAATATTATAGTCAGACAAAGTTCTACCGTCTTCTAATTGTTTA 1333643 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| |||| | |||||| ||||| | || |||| ||||||||||| ||| || Sbjct 1333644 CCAGCAAAAATTAAACGTTGTTGGTCTGGAGGAATACCTTCTTTATCTTGAAT-TTTACT 1333702 Query 81753 TTT-ATATTTTCAATCGTAT 81771 ||| | ||| ||||| |||| Sbjct 1333703 TTTGACATTATCAATAGTAT 1333722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903410398222560