Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascoidea_20asiatica_20[genbank_20GCA_5F001600695.1_202016-03-01] 71 sequences; 20,313,720 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4 114 3e-20 seq1 114 3e-20 >seq4 Length=1551466 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| || ||||| ||||| ||| ||||| ||| | || || || | Sbjct 1333987 ACTGGTAAAACCATTACTTTAGAAGTTGAATCATCTGATACAATTGATAATGTTAAATCA 1333928 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| |||||||||||| || || ||| | | ||||||||||| ||| Sbjct 1333927 AAGATCCAAGATAAAGAAGGAATTCCACCAGATCAACAACGTTTAATCTTCGCCGGTAAG 1333868 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || || |||||||| || ||||| | || |||||| | || ||||| || |||||||| Sbjct 1333867 CAATTAGAAGATGGTAGAACTTTATCTGACTACAACATTCAAAAAGAATCAACTCTTCAT 1333808 Query 206374 CTTGTTTTGAGACTTCGA 206391 | || || |||||| || Sbjct 1333807 TTAGTCTTAAGACTTAGA 1333790 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | ||||| ||||| || ||||| ||||| ||| ||||| || | || Sbjct 1333312 AAAACTTTGACAGGTAAAACAATTACTTTAGAAGTTGAATCATCTGATACTATTGATAAT 1333253 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| |||||||| ||| || || ||| | | || || Sbjct 1333252 GTTAAGTCCAAGATTCAAGATAAAGAAGGTATTCCTCCTGATCAACAACGTTTGATTTTT 1333193 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||| || || |||||||| || || || | ||||| || | || ||||||||| Sbjct 1333192 GCCGGAAAACAATTAGAAGATGGTAGAACCTTATCTGATTATAATATTCAAAAAGAGTCT 1333133 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 || ||||| | ||| | ||| Sbjct 1333132 ACACTTCATTTAGTTCTTAGA 1333112 Score = 96.9 bits (106), Expect = 8e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| || || |||||||| ||| ||||| || | || Sbjct 1333540 AAAACTTTAACTGGTAAAACCATTACCTTGGAAGTTGAATCATCTGATACTATTGATAAT 1333481 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| |||||||| |||||||||||| || || ||| | | || || Sbjct 1333480 GTTAAATCAAAA-ATTCAAGATAAAGAAGGAATTCCACCAGATCAACAACGTTTGATTTT 1333422 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||||| || || |||||||| || || || | ||||| || | || ||||| || Sbjct 1333421 TGCCGGAAAACAATTAGAAGATGGTAGAACCTTATCTGATTATAATATTCAAAAAGAATC 1333362 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 |||||||| | ||||| ||| Sbjct 1333361 AACTCTTCATTTAGTTTTAAGA 1333340 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 || |||||| || || | |||||||| || ||||| || | || ||||||| ||||| Sbjct 1333790 TCTAAGTCTTAAGACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCAGATAAAGT 1333849 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || |||||||| | ||||| ||||||||||| | ||||||||| Sbjct 1333850 TCTACCATCTTCTAATTGCTTACCGGCGAAGATTAAACGTTGTTGA 1333895 >seq1 Length=2713227 Score = 114 bits (126), Expect = 3e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||| ||||| |||||||| ||||||||| |||||| || | || Sbjct 1439422 AAAACCCTTACAGGTAAAACTATCACTTTAGAAGTGGAATCTTCTGATACCATTGATAAT 1439363 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| | ||| |||||||| |||||||| || || || |||||| | ||||| Sbjct 1439362 GTTAAATCCAAA-ATTCAAGATAAAGAAGGTATCCCACCAGATCAACAAAGATTAATCTT 1439304 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || || ||||||||||| ||||| | ||||| ||| | || ||||| || Sbjct 1439303 TGCTGGTAAACAATTAGAAGATGGAAGAACTTTATCTGATTATAACATTCAAAAAGAATC 1439244 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 ||| | || | ||||| ||| Sbjct 1439243 AACTTTACATTTAGTTTTAAGA 1439222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181819724912391