Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascoidea_20asiatica_20[genbank_20GCA_5F001600695.1_202016-03-01] 71 sequences; 20,313,720 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq8 116 9e-21 seq4 114 3e-20 seq1 98.7 2e-15 >seq8 Length=720923 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | |||||||| || |||||||| || |||||||| | | ||| ||||| Sbjct 254701 TCTAAGAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGATAAGGTTCTTCC 254760 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || || || | |||||||| || || |||| ||||| || Sbjct 254761 ATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTT 254820 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || | ||| || ||| ||||| || || || |||||| |||||| || | ||| || Sbjct 254821 ATCTTAGATTTTACTTTTAACGTTATCAATAGTATCAGAGGATTCAACTTCTAAAGTAAT 254880 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || || || || | ||| || ||||| Sbjct 254881 AGTTTTACCAGTTAAAGTTTTGACAAA 254907 >seq4 Length=1551466 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | ||||| || ||||||||||| || |||||||| | | ||| || || Sbjct 1333112 TCTAAGAACTAAATGAAGTGTAGACTCTTTTTGAATATTATAATCAGATAAGGTTCTACC 1333171 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || || || | |||||||| |||||||||| ||||| || Sbjct 1333172 ATCTTCTAATTGTTTTCCGGCAAAAATCAAACGTTGTTGATCAGGAGGAATACCTTCTTT 1333231 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || ||||| || || || || || || ||||| |||||| || | ||| || Sbjct 1333232 ATCTTGAATCTTGGACTTAACATTATCAATAGTATCAGATGATTCAACTTCTAAAGTAAT 1333291 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || | ||| || ||||| | ||||| Sbjct 1333292 TGTTTTACCTGTCAAAGTTTTAACAAAAATTTGCAT 1333327 Score = 102 bits (112), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | |||||||| || |||||||| || ||||| || | | || || || Sbjct 1333568 TCTAAGAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAGTCAGACAAAGTTCTACC 1333627 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | || || || || || || | ||||||||||| ||||||| ||||| || Sbjct 1333628 GTCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGAGGAATACCTTCTTT 1333687 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || ||| || || || || || || || ||| || || | |||||| Sbjct 1333688 ATCTTGAATTTTACTTTTGACATTATCAATAGTATCTGAAGATTCTACTTCTAAAGTGAT 1333747 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| ||||| | ||||| Sbjct 1333748 TGTCTTACCAGTTAAGGTCTTGACAAAAATTTGCAT 1333783 >seq1 Length=2713227 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | || | ||| || |||||||| ||||||||||| | | || ||||| Sbjct 1439222 TCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATGTTATAATCAGATAAAGTTCTTCC 1439281 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || ||||| | | |||||| || || || | ||||| || Sbjct 1439282 ATCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCTGGTGGGATACCTTCTTT 1439341 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || ||| || || || ||||| ||||| ||| || || | |||||| Sbjct 1439342 ATCTTGAATTTTGGATTTAACATTATCAATGGTATCAGAAGATTCCACTTCTAAAGTGAT 1439401 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || || || || || || || ||||| Sbjct 1439402 AGTTTTACCTGTAAGGGTTTTAACAAA 1439428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150945533915