Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascoidea_20asiatica_20[genbank_20GCA_5F001600695.1_202016-03-01] 71 sequences; 20,313,720 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq1 127 3e-24 seq2 89.7 7e-13 >seq1 Length=2713227 Score = 127 bits (140), Expect = 3e-24 Identities = 370/570 (65%), Gaps = 20/570 (4%) Strand=Plus/Minus Query 155889 CCCTTTTCATCGGGTAATCCAATTTCTATCTTCAA-TTCCAACCGCCCAGGTCTTAATAA 155947 || |||||||| ||||| |||||| | ||| || ||| || | |||||||||||||| Sbjct 478526 CCATTTTCATCAGGTAAAGAAATTTCAA-CTTGAACTTCAAATCTACCAGGTCTTAATAA 478468 Query 155948 TGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGA 156007 || | |||||||| || ||| || |||||||| |||| |||||| || ||||| Sbjct 478467 AGCATTATCAATTAAATCTTTTCTATTAGTCATACCAATGACTAAAATATTATTTAATTG 478408 Query 156008 TTCTACACCGTCTATTTTAGACAATAATTGATTGACTA------CGGCGTCGTGCGTGGC 156061 || ||||| || ||||| | ||||||||||| || | | || | || | Sbjct 478407 ATCAACACCATCCATTTTTGCTAATAATTGATTAACAACATTATCAGCAACACCAGTACC 478348 Query 156062 GTTATC------ACCGCGTTTTTTACACAGAGCATCTATTTCATCGAAGACGATAACGTG 156115 | | | ||| | || |||| | | || ||||| |||||| || | |||| || Sbjct 478347 ATCACCTCTTGAACCTCTTTGTTTAAAAACAGAATCTAATTCATCAAAAATAATAATATG 478288 Query 156116 TAATCCGCTGGCTAAACCCAATTTNNNNNNNNNNNNNNNAGCCTCTTGAAACAATCGTCT 156175 ||| | || ||| | ||| |||| ||| || ||| Sbjct 478287 TAAACTTGATTCTTCACCTTTTGATTTATATTCATCTTCAGCATCTTTAAATAAAGCTCT 478228 Query 156176 GACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACCGTTAACTATTTT 156235 | || |||| || || |||||||| |||| | ||| ||||| ||||| ||||| Sbjct 478227 AATATTTTCTTCAGAAGATCCAACATATTTACTTAAAATTTCTGGACCATTAACAATTTT 478168 Query 156236 GACGGGTCGT---GATTTAAAAGCTTGAGCGATACAGCGAGCCATTAATGTTTTACCGCA 156292 || || | |||||| | || | | || | || ||||| ||||| || Sbjct 478167 --TGGTTCATTTGCATTTAACA-TTTTACCAATTTTTCTTGCAATTAAAGTTTTTCCAGT 478111 Query 156293 CCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTTACAACCTAATTTTTCAGTTAT 156352 || ||||| || ||||| || | ||||| | ||| | ||||||||||||| ||| Sbjct 478110 ACCTGGAGGACCATATAATAACATACCTTTAACATGAGTTATACCTAATTTTTCAATTAA 478051 Query 156353 TTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAAAAATGAGAGAAAATTCTTTATC 156412 || |||| ||| ||||| ||||||| |||||| ||| |||||| ||||| Sbjct 478050 ACCTGGTGGAAAAATTCTACTTGCAAAAGCTCTTCTAAAAATTTGAGTAAATTCATTATC 477991 Query 156413 CAATCCCCCCACACCCATTTCCTCAAAATT 156442 || || || | ||||||||| ||||| || Sbjct 477990 TAAACCACCAATACCCATTTCTTCAAATTT 477961 >seq2 Length=2503681 Score = 89.7 bits (98), Expect = 7e-13 Identities = 165/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 50462 TTACAG-AAACAAAGGAG---ATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTG 50517 |||||| ||||| || || || | || ||||| || || ||||||||||||||||||| Sbjct 1553364 TTACAGGAAACAGAGTAGGTGATCTTGGTCCTGTGTATGGGTTTCAATGGAGACATTTTG 1553423 Query 50518 GAGCGCGTTACATAAATTGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAA 50577 | ||| || | || || | |||||| || || | || |||||||| || | Sbjct 1553424 GTGCGAAATATGAAGGCTGTGATGCAAATTATGATGGAAAGGGTGTGGATCAGTTGGCAG 1553483 Query 50578 AAATTATAACGACGTTGAAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGA 50637 || |||| | | | | || || || || | ||||| | || | ||| | || |||| Sbjct 1553484 AAGTTATTAAAAAGCTTAAGACCAATCCATATGATCGAAGAATAATCATGTCAGCTTGGA 1553543 Query 50638 ATCCAACCGATATAGATCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATG 50697 | || | ||| | ||| | ||||||||| |||||| |||| | ||||||||||| Sbjct 1553544 ACCCTGCTGATTTTTCAAAAATGGCTTTACCTCCTTGTCATATTTTTTCTCAATTTTATG 1553603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667074607970760