Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq12 325 5e-84 seq23 174 2e-38 >seq12 Length=1432871 Score = 325 bits (360), Expect = 5e-84 Identities = 1371/2134 (64%), Gaps = 53/2134 (2%) Strand=Plus/Plus Query 52808 GTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTT 52864 |||||||| |||| |||||| || || ||||||| |||||||| || || || Sbjct 861818 GTGAATTGGATGGCACGAGCGGCAGCCTGT---GTACGTAAGTAGTACATACCTGTCTTC 861874 Query 52865 AGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGA-ATAACTCGGATCTGC 52923 | || |||| || ||||| ||||| || | ||| ||| | | |||| Sbjct 861875 AAGCCCTTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTACCCATAGTTGGTGACTGC 861934 Query 52924 TATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTT 52983 | |||||| |||||||||||| || |||| | || ||||| || |||||||| Sbjct 861935 AA-ATGGATGTTCATAGATTGAGACTGGCAGATGTATGCGCCCCTATCAGCAGCCATAAC 861993 Query 52984 TATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTG 53042 |||| | ||| || | ||| ||||||| || | || |||| ||| || | || | Sbjct 861994 GATGACAGACTTCTGAGAAATCTCCCAAACTGTCCTGTACAACTT-CTTGATCTTATCGG 862052 Query 53043 GAAGGTTTGTA---TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCAT 53099 ||| ||||| ||||||||||| || || || || ||||| || ||| Sbjct 862053 GAACGTTTGGCAAGTTCTGAATAGAACCGTTGTCGTGAATGATGAAGTTCTTCATTGCAT 862112 Query 53100 CATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATT 53159 | ||||||| | | || | | | |||| | | | |||||||| | || |||| Sbjct 862113 CGTTCCATATTCCCATGTCAATAAGATCTCTCAACATGTAAGGATTAACGATCTGGAATT 862172 Query 53160 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTAT 53219 | |||| | ||||| | || || ||| ||| | ||||| | | | || |||| Sbjct 862173 CACCAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGTTCGAAACATTCGTTAT 862232 Query 53220 TTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 53279 |||| ||| || | ||| || ||||||||||||||||||||||| | | ||||||| Sbjct 862233 AACCCATAATCTGGGAAGTAGAAGCAGTCGGCATAGGTGCCACCAAAAGAGAGTTTCTAA 862292 Query 53280 GACC-GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACA 53338 |||| || | | || ||| | || |||| ||||| | ||| ||||||| || Sbjct 862293 GACCAGTCTTGGCA-ATCTTAGCCTTCAGAGTATCCCAGTCCCACAGATCCGTAGGCTTT 862351 Query 53339 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 53398 |||||||||||| || || || ||| ||||||| | Sbjct 862352 TTGTTCCACATATCATATTGTAGAATACCCTTTGAAGCTGGAGAGCCTTCATATGTCTGA 862411 Query 53399 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 53458 || | || || | | |||| || | |||| |||||| ||| ||| | ||| Sbjct 862412 TAAGTACCCTCTTCCACAGCAAGCTGGTTGGATTCCTCCAATGCAGCGTGATACAAGGTC 862471 Query 53459 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAG-AG 53517 || || |||| | || || || |||| || | | ||||| || || | |||| | Sbjct 862472 TCAAATATCTGAATGTTAAGCTCCCGTGCATCTGGACAGTCAAAAGG-TAGTCTAAGCAT 862530 Query 53518 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 53577 | || | || || | || || | ||||| | | |||||||| | |||| | || || Sbjct 862531 GAAGAAGGTATCAGCAAGACCCTGGATACCAAGAGCAATAGGTCTGTTTCTCATGTTGGA 862590 Query 53578 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG-- 53635 | | || || |||| ||||| ||||| | || |||| || | ||| | | Sbjct 862591 GTTACGGGCCTCAGGAACTGGATAGTAATTTCTGTCAATAACACGGTTTAAGTTACGGGT 862650 Query 53636 -ACAA--TTACT----TTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCC--ATCT 53686 |||| ||| | ||| || | || | |||| | | ||| | ||| |||| Sbjct 862651 AACAACTTTAGTAATCTTGTGCAACTTCTCGAAGTTGA-ACCAGCAA-TGATCCTCATCT 862708 Query 53687 -ATT--ACAAA--CATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAG 53741 | | ||||| || | ||| ||| |||| ||||| || | ||||||| | Sbjct 862709 GACTCAACAAAGGCAGG--CAAACAAATGTTGGCCAAGTTACACACACCAACCTCATCTG 862766 Query 53742 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 53801 | | || | | | |||| ||| | || | | |||||||| || || || | Sbjct 862767 GAGAGGAGTACTCGACAACCTCACAGCACAAGTTCGAAGATTTGATGGTACCCAAGTTCT 862826 Query 53802 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAA 53861 |||||||||||| | ||||| |||||||| || | ||||| || ||||||||||| Sbjct 862827 TCTGATTACTCTTTCTATTACAAGCATCCTTGTAGATCATGAAAGGTGTACCAGTTTCTG 862886 Query 53862 TCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGAT-TTGTATCTC 53920 |||| | || | |||| | ||| | ||||||| | | | | || | || Sbjct 862887 TCTGAGCCTCCAAAATCTGGTACCATAACTTCTGAGCCTTCACTGTTCTTCTTCCACGTC 862946 Query 53921 TTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAAT 53980 || || | ||||| | || |||||| || |||||||| || |||||| | Sbjct 862947 CTT-CTTTCTCGTAACGAGTGTACAATTTCTCGAACTCGTCACCGTAAACATCTGAGAGA 863005 Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 || || ||| ||| | | ||| | ||||| ||| || ||| || |||||| Sbjct 863006 CCTGGTGCCTCAGAAGGAGAGAACAATGTCCACTTGTCGTTGCTCTCCACACGCTTCATA 863065 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || | ||| ||||||||||||||| ||| | ||| | | | | ||||| || || Sbjct 863066 AATAAATCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCACGAATCTCCTCTTTACCA 863125 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||||| | | ||||| || | | ||||||| |||||| || |||||||| || Sbjct 863126 TGATTCTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGCTCCAAGTAAATA 863185 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | || | || || | ||||| || || ||||| | |||||||| || | || | Sbjct 863186 GCAATGGCACCTGGTCTCTTGTTACCACCTTGATCCACATATCTAGCAGTACTGTTGAAC 863245 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | | ||| ||||| ||||| ||||||| |||||| || |||| ||||| ||| Sbjct 863246 ACACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCAATATACGAACCA 863305 Query 54281 CTGGCACGAATATTACTAAT-TGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339 ||| |||||| || ||| ||| ||||| || || || || | ||||| || || || Sbjct 863306 GTGGAACGAATGTTGTGAATGTGA-AGACCAATACCACCAGCAGTCTTAGAAATCAAAGC 863364 Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399 || |||| || ||||| ||||| || || ||| ||||| |||| || || || Sbjct 863365 ACACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCATTGCAACTAAGAA 863424 Query 54400 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 54459 || ||||| || | || ||| || ||||| || || || || || || || || Sbjct 863425 GCATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGGTGATGCATGTGT 863484 Query 54460 AAACCATTTTTCAGAAAGTAGATTGTACG-TCTCGATAGCTGAGTCTATATCCCATTGAT 54518 || || | | || | | | || | | | | | || || ||||| || Sbjct 863485 GAAGTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTAG-GAATATCATCACCAT 863543 Query 54519 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 54578 |||| || || || || | ||| | | ||| || ||||||||| | | ||| || | Sbjct 863544 GAATACCGACGGCCACTCTCATAAGAAGGTGTTGTGGTCTTTCAGCAACCTTACCATTAA 863603 Query 54579 TTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 54638 || ||| || || || ||||||||| || |||||||| |||||||| ||||| | Sbjct 863604 TTCTCAACAGATAAGAACGTTCCAAAGTCTTGAAACCAAAGTAGTTGTAACTGAAGTCAC 863663 Query 54639 GTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAA 54698 | |||||| |||| ||||||| | | |||||||| | |||| ||| | ||| Sbjct 863664 GGTCGTAATTAATGGCTGAGTTCAACTCATCCTTATGCTCCATAAC--AATC--TTATAA 863719 Query 54699 TACT----TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAA 54754 || ||||| || ||||| | ||| | || |||||| ||||| ||| | Sbjct 863720 ACCTCATCAGAAATCATAGGAGACTTCTTCTGGGTCTTTGGATTGTAGTAGTTGTATAGA 863779 Query 54755 TCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATT 54814 |||| || || ||| || | || || || | ||||| | |||||| | || | | Sbjct 863780 TCCTCTATAACATCAGAGAAAGGCTTCTTAGTCTGCTTGTGCAAATTTGAGATTGCAAGT 863839 Query 54815 CTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGC 54873 |||||||| | | | ||||| || ||||| ||| || || || ||||| |||| || Sbjct 863840 CTAGCGGCCAAAGTAGCATAGTCTGGATGCATTGTGGT-CATGTATGCTGCAGTTTCAGC 863898 Query 54874 TGTCAGAGTGTCCAATTCTACCGTTGTTACTCCA 54907 |||| | ||||||| || | || || || ||| Sbjct 863899 AGTCAAATTGTCCAACTCAATGGTGGTAACACCA 863932 >seq23 Length=1356690 Score = 174 bits (192), Expect = 2e-38 Identities = 569/868 (66%), Gaps = 22/868 (3%) Strand=Plus/Minus Query 23865 TTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTG 23924 || || || |||||||| ||||| | || || |||||||||||||| ||| ||||||| Sbjct 991502 TTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAATGGATTT 991443 Query 23925 GTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACA-AACTC 23983 || || || || | | | |||||||| | || ||| || || || ||| ||||| Sbjct 991442 GTGACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGC-ACAGAACTC 991384 Query 23984 CATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGT 24043 | || |||||| || | ||||| || | | |||||||||||| | | Sbjct 991383 AACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAGCGTCTCT 991324 Query 24044 A-AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTT-CTTCA 24101 ||||| | || | ||||| || || || || || || |||| | | | | | Sbjct 991323 CCAGAAAGTTTTCT-CAATATTAACAGCCTCGGTCATGATTC-TCTTGATAATGACCTTA 991266 Query 24102 CTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCG 24161 || ||||||| | || || |||| | ||||| |||||| ||||||||||| Sbjct 991265 CTTGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGACCCTCA 991206 Query 24162 TCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGC 24221 ||||| | || | ||||| || ||||| || || ||||| | || | ||| || | | Sbjct 991205 TCTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCTTCAAC 991146 Query 24222 CAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATA 24281 || || ||||| ||||| |||||||| || || | ||||| | || ||||| |||| Sbjct 991145 CAGAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAGCAACC 991086 Query 24282 AGTCTTTCTCCATAACCGGCGCTGTCA---TGTATCCACTTTTGAGCCCAATCGGCCTTC 24338 | ||| || |||| || ||| | |||||| | |||||| |||||| Sbjct 991085 AATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAGCCTTC 991026 Query 24339 TTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCT 24398 | || | | || ||||| | || ||||| || | |||| || || | || Sbjct 991025 TCCTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCTTGTCA 990966 Query 24399 TTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATT 24458 | | ||| || || |||||||| ||| | || || || ||||| |||| || Sbjct 990965 GTGATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCATAATC 990906 Query 24459 TGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGTA-CTTCTATACAAAATCGTTC-- 24514 || || || ||||| ||| ||||| ||||| ||| | || || | ||| |||| Sbjct 990905 TGGAAACCATAGAAGGCTCTTGCCTCAGGTAA-CTGCACCTGCTTCATAAA---GTTCTG 990850 Query 24515 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 24574 ||| ||||| |||| || || || || || ||||| || ||||| ||| | || Sbjct 990849 TGCCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAGAGAT 990790 Query 24575 AAAATATTTTTCGTCTGGTGTTAGT----TTATTCCAATCATTGATATCTTTAGATATAT 24630 || ||| | || | ||| || | | |||||| || | | ||| || || | || Sbjct 990789 GAAGTATCTCTCAT-TGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAGAGAT 990731 Query 24631 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCAT 24690 | | || || | ||||| || || ||||| ||||| || ||||| | ||| || |||| Sbjct 990730 CGATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATATCAT 990671 Query 24691 GATATTGAATTGGAAAAATAACAAATCT 24718 || ||||| || || || || ||||| Sbjct 990670 CGTACTGAATAGGGAACATCACGAATCT 990643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721377354400