Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05-
08] 30 sequences; 12,880,761 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq23 132 5e-26
seq12 95.1 1e-14
>seq23
Length=1356690
Score = 132 bits (146), Expect = 5e-26
Identities = 417/642 (65%), Gaps = 17/642 (3%)
Strand=Plus/Plus
Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650
|||||| || | | |||||||| ||||| || || ||| || || |||| ||||||
Sbjct 990631 GAGAACATCCACAGATTCGTGATGTTCCCTATTCAGTACGATGATATATGGCAAATGTAC 990690
Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710
|| ||||||||||| || |||||||| | ||||||| | || || || ||||| || |
Sbjct 990691 AAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATCGATCTCTCAAAGGATTTGACC 990750
Query 116711 GACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767
|||||| || |||| | ||| ||| | | |||||| | || |||||||
Sbjct 990751 GACTGGAATGACAAGATGAATGCCAATGAGAGATACTTCATCTCTCGTGTCTTGGCCTTC 990810
Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827
|| ||||| || || || ||| | |||||| ||| || || || |||||
Sbjct 990811 TTTGCCGCTTCAGATGGTATTGTCGATGAGAATTTGGCACAGAACTTTATGAAGCAGGTG 990870
Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887
||| | | ||||| | |||||| || || ||||| | |||||| | |||||
Sbjct 990871 CAGTTACCTGAGGCAAGAGCCTTCTATGGTTTCCAGATTATGGTTGAGAACATCCACTCT 990930
Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCG---- 116943
|| | ||||| | ||||| || || | | || || | || ||||
Sbjct 990931 GAGACTTATTCCCTTTTGATCGAGACCTATAT---CACTGACAAGAAAGAG-TCCGACTA 990986
Query 116944 TTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCG 117003
||||| || |||||| | || || || | || |||||||| ||||| || |
Sbjct 990987 CTTGTTCAATGCCATCCATACAATTCCACCTATTAAGGAGAAGGCTTTATGGGCTTTGAG 991046
Query 117004 CTGGATCGCCGGCAGAGAGGCCGCCTT---CGGCGAGCGCCTGGTGGCCTTCGCGGCCGT 117060
||||| || || | || || | ||| | |||| || || || ||| |
Sbjct 991047 ATGGAT---AAACAATGATGATGCTTTGTATGCTGAGAGATTGGTTGCTTTTGCTGCCAT 991103
Query 117061 CGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCT 117120
|| || || || || || || || ||| |||| || ||| | ||||| | || |
Sbjct 991104 TGAAGGTGTGTTTTTCTCTGGATCGTTTGCCTCCATCTTCTGGTTGAAGAAGAGAGGTTT 991163
Query 117121 CATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGA 117180
||||| ||||| || ||| |||||||| |||| ||| || |||||||| ||| |||
Sbjct 991164 GATGCCAGGCCTTACGTTCTCTAACGAGCTTATCTGCAGAGATGAGGGTCTACATACCGA 991223
Query 117181 CTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAG 117222
||||| || | ||||| || ||| ||| | ||| ||
Sbjct 991224 TTTTGCATGCCTTTTGTTCTCTCACTTGAAGCATCCACCAAG 991265
>seq12
Length=1432871
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
||||||||||| ||||| || || | || || || || |||||| | || || || |
Sbjct 1192952 AAAATGCAAATTTTCGTTAAGACTTTGACCGGTAAGACTATCACCTTGGAGGTGGAGTCT 1192893
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
|||||| | | | | ||||| |||| || | ||||| ||||| ||||| | ||
Sbjct 1192892 TCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAGGGAATCCCACCAGAT 1192833
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || | |||| || || || ||| |||| || | | || | ||||||
Sbjct 1192832 CAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACTTTGTCGGACTAC 1192773
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||||||| | || || || | || ||| | ||||| || ||
Sbjct 1192772 AACATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGAGATTGAGAGGTGG 1192723
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219006792800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |