Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 102 9e-17 seq25 100 3e-16 seq12 95.1 1e-14 >seq1 Length=1856900 Score = 102 bits (112), Expect = 9e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| || | ||| ||||| || | || ||||| ||||| ||||| |||| | Sbjct 768261 CCTCCTCTCAATCTCAAGACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAC 768202 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| | | || || | |||||||||||| || || | || ||| || || | || Sbjct 768201 AAAGTTCTACCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 768142 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | |||||| ||| ||| ||||| |||| | | | || ||| || ||||| Sbjct 768141 ATTCCCTCCTTATCCTGGATCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCACC 768082 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || | ||||| || || ||||| | ||||| || || |||||||||||| Sbjct 768081 TCCAAGGTGATAGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTTT 768031 >seq25 Length=1112461 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||||||| | | ||||| || | || ||| ||||||||||||||||||| Sbjct 695687 CCTCCTCTTAACCTAAGAACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAA 695746 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | |||| || | |||||||| || ||||| | | ||||||||| | || Sbjct 695747 AGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGA 695806 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||| || || ||||| || | | | | ||||| ||||| || Sbjct 695807 ATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACC 695866 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | |||||| || || ||||| | ||| || ||||||||||||||| Sbjct 695867 TCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 695914 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || || | | |||||||| | || ||| ||||||||||||||||||| Sbjct 695914 TCCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGA 695973 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || | |||| || | |||||||| || ||||| | | ||||||||| | || Sbjct 695974 AAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGG 696033 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||| || || ||||| || | | | | ||||| ||||| || Sbjct 696034 AATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAAC 696093 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | |||||| || || ||||| | ||| || ||||||||||||||| Sbjct 696094 CTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 696142 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || || | | |||||||| | || ||| ||||||||||||||||||| Sbjct 696142 TCCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGA 696201 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || | |||| || | |||||||| || ||||| | | ||||||||| | || Sbjct 696202 AAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGG 696261 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||| || || ||||| || | | | | ||||| ||||| || Sbjct 696262 AATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAAC 696321 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | |||||| || || ||||| | ||| || ||||||||||||||| Sbjct 696322 CTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 696370 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || || | | |||||||| | || ||| ||||||||||||||||||| Sbjct 696370 TCCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGA 696429 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || | |||| || | |||||||| || ||||| | | ||||||||| | || Sbjct 696430 AAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGG 696489 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||| || || ||||| || | | | | ||||| ||||| || Sbjct 696490 AATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAAC 696549 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||| || || || |||| ||||| ||||| |||||||| Sbjct 696550 CTCTAACGTGATTGTCTTTCCAGTTAATGTCTTCACAAAAATTTGCAT 696597 >seq12 Length=1432871 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| || | ||| ||||| || | || |||||| || || ||||| || | | Sbjct 1192723 CCACCTCTCAATCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAC 1192782 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| | | || || | |||||||||||| || || | || |||||| || | || Sbjct 1192783 AAAGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGG 1192842 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||||||| ||| ||||| |||| | | | |||||| || ||||| Sbjct 1192843 ATTCCCTCCTTGTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCCACC 1192902 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || | ||||| || || || || | ||||| || || ||||||||||| Sbjct 1192903 TCCAAGGTGATAGTCTTACCGGTCAAAGTCTTAACGAAAATTTGCATTTT 1192952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817385568400