Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq25 113 7e-20 >seq25 Length=1112461 Score = 113 bits (124), Expect = 7e-20 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | |||||| ||||| ||||| ||||| ||||| ||||| | || || Sbjct 695933 ACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCC 695992 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 ||||| || || ||||| ||||| || ||||| || || ||||||||||| |||||||| Sbjct 695993 AATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGA 696052 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||| || ||| ||| || ||||| |||||||| || Sbjct 696053 ATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTTT 696112 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || || ||||||| || ||||||||| Sbjct 696113 CCCGTCAACGTTTTAACAAAGATTTGCATT 696142 Score = 113 bits (124), Expect = 7e-20 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | |||||| ||||| ||||| ||||| ||||| ||||| | || || Sbjct 696161 ACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCC 696220 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 ||||| || || ||||| ||||| || ||||| || || ||||||||||| |||||||| Sbjct 696221 AATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGA 696280 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||| || ||| ||| || ||||| |||||||| || Sbjct 696281 ATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTTT 696340 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || || ||||||| || ||||||||| Sbjct 696341 CCCGTCAACGTTTTAACAAAGATTTGCATT 696370 Score = 105 bits (116), Expect = 1e-17 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | |||||| ||||| ||||| ||||| ||||| ||||| | || || Sbjct 696389 ACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCC 696448 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 ||||| || || ||||| ||||| || ||||| || || ||||||||||| |||||||| Sbjct 696449 AATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGA 696508 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||| || ||| ||| || |||| |||||||| || Sbjct 696509 ATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAACGTGATTGTCTTT 696568 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 || |||||||| || | || |||||||| Sbjct 696569 CCAGTTAATGTCTTCACAAAAATTTGCAT 696597 Score = 104 bits (114), Expect = 3e-17 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || | ||||| || | ||| || ||||| ||||| ||||| ||| Sbjct 695687 CCTCCTCTTAACCTAAGAACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAA 695746 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | || || ||||| || || ||||| ||||| || ||||| || || ||| Sbjct 695747 AGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGA 695806 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| |||||||| ||| || ||| ||| || Sbjct 695807 ATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACC 695866 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||| |||||||| || || || || ||||||| || ||||||||| Sbjct 695867 TCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 695914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743526121177600