Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05-
08] 30 sequences; 12,880,761 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq25 113 7e-20
>seq25
Length=1112461
Score = 113 bits (124), Expect = 7e-20
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
|||||||| | |||||| ||||| ||||| ||||| ||||| ||||| | || ||
Sbjct 695933 ACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCC 695992
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188
||||| || || ||||| ||||| || ||||| || || ||||||||||| ||||||||
Sbjct 695993 AATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGA 696052
Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248
||| || ||| ||| || ||||| |||||||| ||
Sbjct 696053 ATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTTT 696112
Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATT 146278
|| || || ||||||| || |||||||||
Sbjct 696113 CCCGTCAACGTTTTAACAAAGATTTGCATT 696142
Score = 113 bits (124), Expect = 7e-20
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
|||||||| | |||||| ||||| ||||| ||||| ||||| ||||| | || ||
Sbjct 696161 ACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCC 696220
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188
||||| || || ||||| ||||| || ||||| || || ||||||||||| ||||||||
Sbjct 696221 AATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGA 696280
Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248
||| || ||| ||| || ||||| |||||||| ||
Sbjct 696281 ATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTTT 696340
Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATT 146278
|| || || ||||||| || |||||||||
Sbjct 696341 CCCGTCAACGTTTTAACAAAGATTTGCATT 696370
Score = 105 bits (116), Expect = 1e-17
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
|||||||| | |||||| ||||| ||||| ||||| ||||| ||||| | || ||
Sbjct 696389 ACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCC 696448
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188
||||| || || ||||| ||||| || ||||| || || ||||||||||| ||||||||
Sbjct 696449 AATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGA 696508
Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248
||| || ||| ||| || |||| |||||||| ||
Sbjct 696509 ATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAACGTGATTGTCTTT 696568
Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277
|| |||||||| || | || ||||||||
Sbjct 696569 CCAGTTAATGTCTTCACAAAAATTTGCAT 696597
Score = 104 bits (114), Expect = 3e-17
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| ||||| | || | ||||| || | ||| || ||||| ||||| ||||| |||
Sbjct 695687 CCTCCTCTTAACCTAAGAACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAA 695746
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| ||||| | || || ||||| || || ||||| ||||| || ||||| || || |||
Sbjct 695747 AGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGA 695806
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|||||||| |||||||| ||| || ||| ||| ||
Sbjct 695807 ATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACC 695866
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278
||||| |||||||| || || || || ||||||| || |||||||||
Sbjct 695867 TCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 695914
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743526121177600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |