Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq23 158 1e-33 >seq23 Length=1356690 Score = 158 bits (174), Expect = 1e-33 Identities = 563/869 (65%), Gaps = 27/869 (3%) Strand=Plus/Minus Query 15958 AACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAA 16017 ||||||||| ||||||||||| || || || | || || ||||||||||| || || || Sbjct 991509 AACTCTCTTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAA 991450 Query 16018 AGGATTTTTTGAACAATAGTA---TTTATCGCATCCCAATTCCAACAATAATCTATCCGC 16074 ||| ||| ||| | ||| || |||||||||||| | | | || || | || Sbjct 991449 TGGA-TTTGTGA--CGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGT-CGG 991394 Query 16075 CACA-AATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGA 16133 |||| || || | ||||| ||| | ||| ||||||| || | ||| ||| || | Sbjct 991393 CACAGAACTCAACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAA 991334 Query 16134 TTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTT---- 16189 || ||| | | ||| |||| || |||||||| || || | || || |||||| Sbjct 991333 GAGCGTCTCTCCAGAAAGTTTTCTCAATATTAACAGCCTCGGTCATGAT-TCTCTTGATA 991275 Query 16190 ACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAA 16249 | || || || ||| | || ||||| |||| | || |||||||| | Sbjct 991274 ATGACCTTACTTGGTGGATGCTT---CAAGTGAGAGAACAAAAGGCATGCAAAATCGGTA 991218 Query 16250 TGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCT 16309 || | || || || || | || | |||||| || || ||||| |||||||| | ||| Sbjct 991217 TGTAGACCCTCATCTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCT 991158 Query 16310 CGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCG 16369 | || || | ||| || || | |||||| || ||||| || || | |||||||| || Sbjct 991157 CTCTTCTTCAACCAGAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCA 991098 Query 16370 GCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcc 16429 ||||| |||||||||| |||| | ||| || | | | | ||||||| | |||| Sbjct 991097 GCAAAAGCAACCAATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCC 991038 Query 16430 caatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttt 16489 || || || | |||| | || | | || ||||| || || || | Sbjct 991037 CATAAAGCCTTCTCCTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGAC 990978 Query 16490 tCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTC 16549 ||||| | || ||||| || || || | | ||| | || || || || ||| Sbjct 990977 TCTTTCTTGTCAGTGATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTC 990918 Query 16550 TCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTG----TACTTCAGA 16605 || | ||||| |||||||| ||| ||| || || | || || | ||||| Sbjct 990917 TCAACCATAATCTGGAAACCATAGAAGGCTCTTGCCTCAGGTAACTGCACCTGCTTCA-- 990860 Query 16606 GTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAG 16665 ||| | | ||| || || || | || || ||||| ||| ||||| || || | Sbjct 990859 --TAAAGTTCTGTGCCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAA 990802 Query 16666 TATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGTTTTAA--CCAGTCAGAAAAATC 16722 | | || || | | | || || | | | || | | |||||| | ||||| Sbjct 990801 GACACGAGAGATGAAGTATCTCTCATTGGCATTCATCTTGTCATTCCAGTCGGTCAAATC 990742 Query 16723 TTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTT 16782 ||||| | ||||| ||| || ||||||| ||||| || | ||||| || ||||||| Sbjct 990741 CTTTGAGAGATCGATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTG 990682 Query 16783 CCATATGTCTTCGTAAACAATAGGAAACA 16811 |||||| || ||||| |||||| |||| Sbjct 990681 CCATATATCATCGTACTGAATAGGGAACA 990653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511826558000