Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq23 181 1e-40 >seq23 Length=1356690 Score = 181 bits (200), Expect = 1e-40 Identities = 586/900 (65%), Gaps = 15/900 (2%) Strand=Plus/Minus Query 13927 AACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAA 13986 |||||| || |||||||| ||||| ||||| ||| || ||||||||||| || || || Sbjct 991509 AACTCTCTTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAA 991450 Query 13987 TGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAA 14045 ||||||||| ||| | | || || || || || | | | | || || || || ||| Sbjct 991449 TGGATTTGT-GACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGCAC 991391 Query 14046 TGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTA 14105 |||||||| || |||| ||| | ||| | |||||||| | || || |||| Sbjct 991390 AGAACTCAACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAG 991331 Query 14106 TATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTT 14165 | | | || ||| || ||| ||||||||| | || || || | ||||| Sbjct 991330 CGTCTCTCCAGAAAGTTTTCTCAATATTAACAGCCTCGGTCATGATTCTCTTGATAATGA 991271 Query 14166 CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 14225 | ||| || |||| || | || || | | || |||||||| ||| || | Sbjct 991270 CCTTACTTGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGAC 991211 Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| | ||||| ||||| || || || | ||||||||||| |||| || | Sbjct 991210 CCTCATCTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCT 991151 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | ||||| || || | || || ||||| || || || | || |||| |||||||| | Sbjct 991150 TCAACCAGAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAG 991091 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | | |||| || || || | || | | || ||||||| | ||||||| || Sbjct 991090 CAACCAATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAG 991031 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAG 14465 || | |||||| ||||| | || ||||| || || | || |||||| Sbjct 991030 CCTTCTCCTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCT 990971 Query 14466 TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTT---CCA 14522 | | || || || || || | | | ||| | |||||||| ||||| | ||| Sbjct 990970 TGTCAGTGATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCA 990911 Query 14523 TAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT-CTGAGTAAAAT 14581 || ||||| |||||||| || ||| || || | | || |||| || |||| | Sbjct 990910 TA---ATCTGGAAACCATAGAAGGCTCTTGCCTCAGGTAACTGCACCTGCTTCATAAAGT 990854 Query 14582 CTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTT 14641 | | |||||||| |||| || |||||||| ||| ||||| || ||||| | Sbjct 990853 -TCTGTGCCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGA 990795 Query 14642 TTAATAAAGTATTGCTCTT---CATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAA 14698 || |||||| ||| | |||| | | ||||| |||| |||||||| || Sbjct 990794 GAGATGAAGTATCTCTCATTGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAG 990735 Query 14699 AGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATT 14758 ||||| | || || | ||||| ||| || | || || || |||||| |||||| Sbjct 990734 AGATCGATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATA 990675 Query 14759 TCTTTATATAATATAGGAAAAACTACAAATCTTGAAGATGTT-TCTTTAAGAATTGGTTC 14817 || | || ||||| || | || |||| || |||||| || || || | ||| || Sbjct 990674 TCATCGTACTGAATAGGGAACATCACGAATC-TGTGGATGTTCTCCTTGAGCAATGGCTC 990616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345419120400