Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq25 105 5e-18 seq12 96.9 3e-15 >seq1 Length=1856900 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | | ||| | |||| |||||| || ||||| || |||||||||||||| | | Sbjct 768261 CCTCCTCTCAATCTCAAGACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAC 768202 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| ||| ||| ||||| || || || ||| |||| | ||| |||||||| || Sbjct 768201 AAAGTTCTACCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 768142 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || |||||||| || | ||||||||| | ||| || || | ||| Sbjct 768141 ATTCCCTCCTTATCCTGGATCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCACC 768082 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || | |||||| | || || ||||| || || || ||||||||||||||| Sbjct 768081 TCCAAGGTGATAGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTTT 768031 >seq25 Length=1112461 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || ||||| |||| |||||| ||||| ||||||||||| ||||| || | Sbjct 695687 CCTCCTCTTAACCTAAGAACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAA 695746 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | | ||||||||||| || || ||| | || | || || || || || Sbjct 695747 AGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGA 695806 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| ||| | |||||| || | | | ||||||| | || Sbjct 695807 ATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACC 695866 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||| | || || ||||| ||||| ||||| ||||||||| Sbjct 695867 TCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 695914 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| | ||||| |||| ||||| || || ||||||||||| ||||| || | Sbjct 695914 TCCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGA 695973 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| | | ||||||||||| || || ||| | || | || || || || || Sbjct 695974 AAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGG 696033 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||| | |||||| || | | | ||||||| | || Sbjct 696034 AATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAAC 696093 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||| | || || ||||| ||||| ||||| ||||||||| Sbjct 696094 CTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 696142 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| | ||||| |||| ||||| || || ||||||||||| ||||| || | Sbjct 696142 TCCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGA 696201 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| | | ||||||||||| || || ||| | || | || || || || || Sbjct 696202 AAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGG 696261 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||| | |||||| || | | | ||||||| | || Sbjct 696262 AATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAAC 696321 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||| | || || ||||| ||||| ||||| ||||||||| Sbjct 696322 CTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 696370 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| | ||||| |||| ||||| || || ||||||||||| ||||| || | Sbjct 696370 TCCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGA 696429 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| | | ||||||||||| || || ||| | || | || || || || || Sbjct 696430 AAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGG 696489 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||| | |||||| || | | | ||||||| | || Sbjct 696490 AATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAAC 696549 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| | || || || ||||| || |||||||||||||| Sbjct 696550 CTCTAACGTGATTGTCTTTCCAGTTAATGTCTTCACAAAAATTTGCAT 696597 >seq12 Length=1432871 Score = 96.9 bits (106), Expect = 3e-15 Identities = 168/243 (69%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAAT 18145 ||||| || ||| || || | | ||| | |||| |||||| || || || || || || Sbjct 1192711 TTCTTCTTCTTA-CCACCTCTCAATCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGAT 1192769 Query 18146 GTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTG 18205 ||||||||| | || ||| | | ||| ||||| || || || ||| |||| | ||| || Sbjct 1192770 GTTGTAGTCCGACAAAGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTG 1192829 Query 18206 TTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTC 18265 ||||| || | || ||||| || || | ||||||||| | ||| ||||| Sbjct 1192830 CTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTC 1192889 Query 18266 ACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||| || | |||||| | || |||||||| || || || ||||||||||| Sbjct 1192890 GGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTCAAAGTCTTAACGAAAATTTGCAT 1192949 Query 18326 TTT 18328 ||| Sbjct 1192950 TTT 1192952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343861302350