Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq26 168 6e-37 seq23 152 5e-32 seq12 145 7e-30 seq25 118 9e-22 seq1 105 6e-18 >seq26 Length=1546578 Score = 168 bits (186), Expect = 6e-37 Identities = 423/635 (67%), Gaps = 6/635 (1%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 ||| |||| ||||| ||||| | |||||| ||||| | |||||| |||| |||| || Sbjct 307271 GAGCCAAGGTTGCACACGGCGATCTCGTCCTTGGATGAGTACTCGACAACTTCGCAGCAG 307212 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCG-ATTGCACGAATC 23145 |||||| |||| || || || | || |||| || | |||| |||||||||||| Sbjct 307211 AGATTGGACGACTTGATGGTTCCAAGGTTCTTCTGATT-CGACTTCGCATTGCACGAATC 307153 Query 23146 CTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCG-CTCGCCACA 23204 ||| || || | | | ||||| || |||||| ||| || | | ||| ||| ||||| Sbjct 307152 CTTATAAAGGAGGAAAGGCGTTCCTGTCTCGGTCTGAGAATAAAGAATCCTCTC-CCACA 307094 Query 23205 TAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACG 23264 | | || | | | || | |||| |||||||| ||||||| | ||||| | Sbjct 307093 CCTTGCGGGCCTTCAACTGCCGTAGATACCGGCCTTCTTTTTCGTACTGTGTGTACAGGG 307034 Query 23265 CGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGG-ACACATGAGA 23323 ||||| |||| ||| | ||| | || || || | | | ||| | | | |||| Sbjct 307033 ATTCAAACTCGGGACCCCATTTGTCTGATAGTCCTGGTGCT-GTATCCTCAGAAAAGAGA 306975 Query 23324 CTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383 |||||||| |||||| | || || ||||| || || ||||| ||||| | || || Sbjct 306974 CTCCACATCTCGTCATTCTTCACACGCCTCATGAACAGGTCCGGAATCCACAACGCATAA 306915 Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443 || || || | || |||| ||||| |||||| |||||| || | || | || ||| Sbjct 306914 AAGAGATCCCTTGCCCGCATTTCCTCCTTGCCGTGGTTCTTCTTGAGGTCGAGGAATTCC 306855 Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503 | | ||||||||||| ||||| || || | | || || || | ||| || || Sbjct 306854 AGAATATCCGCATGCCAGGGCTCAAGATACGCACATATTGCACCAGGACGCTTGTTTCCA 306795 Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563 ||||| || ||||| || ||| |||| |||| || ||||| || || | || | Sbjct 306794 CCCTGGTCAACGTACTTTGCTGTGCTGTTAAACACCCTGAGCATGGGAACAATGCCACTT 306735 Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623 |||| ||| ||| | | || || || ||| |||||| | ||| | Sbjct 306734 GACGTTCCGTTGGTGCCAGAAATGTACGTTCCAGCTGTTCGGACGTTGCTCAGGTGCATT 306675 Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCA 23658 ||||| || ||| | | ||| |||||||| ||||| Sbjct 306674 CCTATTCCACCGGCAGCTTTTGATATCATTGCGCA 306640 >seq23 Length=1356690 Score = 152 bits (168), Expect = 5e-32 Identities = 595/922 (65%), Gaps = 24/922 (3%) Strand=Plus/Plus Query 57537 AGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAA 57596 ||||| || ||||| || ||| | || || || ||| | |||||||| ||||| || Sbjct 990643 AGATTCGTGATGTTCCCTATTCAGTACGATGATATATGGCAAATGTACAAGAAGGCCGAG 990702 Query 57597 GCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCC 57656 || || || ||||| | ||| || | || || || |||||| ||| ||| ||| || | Sbjct 990703 GCCTCTTTCTGGACTGCCGAGGAGATCGATCTCTCAAAGGATTTGACCGACTGGAATGAC 990762 Query 57657 C---TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCC 57713 | || | ||||||| | || || | || ||||| || || ||||| || Sbjct 990763 AAGATGAATGCCAATGAGAGATACTTCATCTCTCGTGTCTTGGCCTTCTTTGCCGCTTCA 990822 Query 57714 GATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAG-AAGTGCAAGTGACGGA 57772 ||||||||||| | |||||||||| | | | ||| ||| | ||||| | | || Sbjct 990823 GATGGTATTGTCGATGAGAATTTGG-CACAGAACTTTATGAAGCAGGTGCAGTTACCTGA 990881 Query 57773 GGCGAGATGCTTTTACGGATTTCAAG----TGGCCATTGAAAACGTGCATTCAGAAATGT 57828 ||| ||| ||| || || |||| || ||| |||| ||| | || || || | | Sbjct 990882 GGCAAGAGCCTTCTATGG-TTTCCAGATTATGG---TTGAGAACATCCACTCTGAGACTT 990937 Query 57829 ATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGAC-TGTTCAAC 57887 |||| || | ||||| || || | | ||||| | ||| || || ||||||| Sbjct 990938 ATTCCCTTTTGATCGAGACCTATATCACTGACAAGAAAGAG-TCCGACTACTTGTTCAAT 990996 Query 57888 GCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA 57947 || ||| | ||||| || | || ||||||| ||| | | | ||||||||| Sbjct 990997 GCCATCCATACAATTCCACCTATTAAGGAGAAGGCTTTATGGGCTTTGAGATGGATAAAC 991056 Query 57948 AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTC 58007 | | || || || ||||| | | || || || ||| | |||||| | || Sbjct 991057 AATGATGATGCTTTGTATGCTGAGAGATTGGTTGCTTTTGCTGCCATTGAAGGTGTGTTT 991116 Query 58008 TTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTG 58067 || || || ||||| | || || ||| ||||||| | || ||||||| ||||| Sbjct 991117 TTCTCTGGATCGTTTGCCTCCATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCAGGCCTT 991176 Query 58068 ACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTA 58127 ||||| |||||| | || | | || |||||||| ||||| |||||||| ||||| Sbjct 991177 ACGTTCTCTAACGAGCTTATCTGCAGAGATGAGGGTCTACATACCGATTTTGCATGCCTT 991236 Query 58128 ATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAG 58187 ||| ||||||| | || ||| | || ||| | || || |||||| Sbjct 991237 TTGTTCTCTCACTTGAAGCATCCACCAAGTAAGGTCATTATCAAGAGAATCATGACCGAG 991296 Query 58188 GCGGTCGCGATCGAAAATGAGTTTGT-CACCGAAGCCCTACCGGTGGCCATGCTCGGTAT 58246 || || || || || | ||| | | || || || || || | | |||||||| Sbjct 991297 GCTGTTAATATTGAGAA-AACTTTCTGGAGAGACGCTCTTCCAGTTTCTTTACTCGGTAT 991355 Query 58247 GAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT 58306 |||| ||| ||||| | ||||| ||||||| ||||||||| | | ||| | | Sbjct 991356 GAACTTCGATATGATGGCTCAGTACGTTGAGTTCTGTGCCGACAGGTTGCTTATCGCATT 991415 Query 58307 --GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCG 58364 ||| |||| || ||||||| | |||||| || || || ||| | ||||| Sbjct 991416 GGGATGCGAGAAGGT--TTACAACGTCACAAATCCATTCGACTTCATGGAAAATATCTCC 991473 Query 58365 CTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTG 58424 | | || ||||| || || || || || | |||| ||| || || || ||| || Sbjct 991474 TTGGCTGGTAAGACTAATTTCTTTGAGAAGAGAGTTTCCGACTACCAGAAGGCCGGTGTT 991533 Query 58425 ATGAGCGGTAACAAGTTGGAGG 58446 ||| | || ||||||||| Sbjct 991534 ATG---GCCAAGGAGTTGGAGG 991552 >seq12 Length=1432871 Score = 145 bits (160), Expect = 7e-30 Identities = 350/522 (67%), Gaps = 11/522 (2%) Strand=Plus/Plus Query 22154 TAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT 22213 || ||||| || ||||||| ||| ||||||| | ||||| || || || |||||||| Sbjct 861857 TAGTACATACCTGTCTTCAAGCCCTTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTA 861916 Query 22214 CCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCT 22273 || | | || | | || | | || | || ||| ||| ||| | || || Sbjct 861917 CCCATAGTTGGTGACTGCAAATGGATGTTCATAGATTGAGACTGGCAGATGTATGCGCCC 861976 Query 22274 CGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGT 22333 | ||| || |||||| || | | | || || ||||| || ||| |||||| Sbjct 861977 CTATCAGCAGCCATAACGATGACAGACTTCTGAGAAATCTCCCAAACTGTCCTGTACAAC 862036 Query 22334 TGCCTGATCTCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTATTGTGTATGAT 22392 | | |||||| || ||| | || || | | |||| | || ||||| | ||| ||||| Sbjct 862037 TTCTTGATCT-TATCGGGAACGTTTGGCAAGTTCTGAATAGAACCGTTGTCGTGAATGAT 862095 Query 22393 CAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACG 22452 || || || || | ||||||||| | || ||| | | | |||| | | || | | | Sbjct 862096 GAAGTTCTTCATTGCATCGTTCCATATTCCCATGTCAATAAGATCTCTCAACATGTAAGG 862155 Query 22453 GTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAACG 22511 || || | || || || || | ||||| | | | || || ||||| || ||||| | Sbjct 862156 ATTAACGATCTGGAATTCACCAG-CAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATG 862214 Query 22512 GTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCA 22571 |||||||| |||| || | |||| ||||| | || ||||| |||||||| || |||| Sbjct 862215 GTTCGAAACATTCGTTATAACCCATAATCTGGGAAGTAGAAGCAGTCGGCATAGGTGCCA 862274 Query 22572 ACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTT--GAGCATCGACCAGTC 22629 || || |||||||| | || ||| | ||| ||| ||| ||| ||| |||||| Sbjct 862275 CCAAAAGAGAGTTTCTAAGACCAGTCTTGGCAATCTTAGCCTTCAGAGTATC--CCAGTC 862332 Query 22630 CCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671 ||||||||| | ||| | |||| ||||||||| ||||| Sbjct 862333 CCACAGATCCGTAGGCTT---TTTGTTCCACATATCATATTG 862371 Score = 107 bits (118), Expect = 2e-18 Identities = 170/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 |||||| |||||||||||||| |||||| |||| || || || |||||| | || || || Sbjct 1192955 ATCAAA-ATGCAAATTTTCGTTAAGACTTTGACCGGTAAGACTATCACCTTGGAGGTGGA 1192897 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 | ||||||| | || | ||||| || | || |||||||| || | || || Sbjct 1192896 GTCTTCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAGGGAATCCCACC 1192837 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 || |||||| | | || || ||||| || |||||||| || | ||| || || Sbjct 1192836 AGATCAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACTTTGTCGGA 1192777 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT-AGAA 31424 || ||||| || || || || |||||||| |||| | ||| |||| || ||| |||| Sbjct 1192776 CTACAACATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGAGATTGAGAGGTGGTAAGAA 1192717 Query 31425 G 31425 | Sbjct 1192716 G 1192716 >seq25 Length=1112461 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| || ||||| | || || || || ||||| | || |||||| | || Sbjct 696598 CATGCAAATTTTTGTGAAGACATTAACTGGAAAGACAATCACGTTAGAGGTTGAATCTTC 696539 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | || || || | || || |||||||| | || || ||||| Sbjct 696538 TGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCA 696479 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | ||||| || || || || ||||||||| | || | ||||| || Sbjct 696478 GCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAA 696419 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||||| || ||||||||| |||| ||||| ||||||| || Sbjct 696418 TATTCAAAAAGAGTCTACTCTTCATTTGGTCCTTAGGTTGAGGGGAGG 696371 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || || |||| || || || ||||| | || |||||| | || Sbjct 696141 ATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCT 696082 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | || || || | || || |||||||| | || || |||||| Sbjct 696081 GACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAG 696022 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | ||||| || || || || ||||||||| | || | ||||| || Sbjct 696021 CAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAAT 695962 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||||| || ||||||||| |||| ||||| ||||||| || Sbjct 695961 ATTCAAAAAGAGTCTACTCTTCATTTGGTCCTTAGGTTGAGGGGAGG 695915 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || || |||| || || || ||||| | || |||||| | || Sbjct 696369 ATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCT 696310 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | || || || | || || |||||||| | || || |||||| Sbjct 696309 GACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAG 696250 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | ||||| || || || || ||||||||| | || | ||||| || Sbjct 696249 CAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAAT 696190 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||||| || ||||||||| |||| ||||| ||||||| || Sbjct 696189 ATTCAAAAAGAGTCTACTCTTCATTTGGTCCTTAGGTTGAGGGGAGG 696143 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || || |||| || || || ||||| | || |||||| | || Sbjct 695913 ATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCT 695854 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | || || || | || || |||||||| | || || |||||| Sbjct 695853 GACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAG 695794 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | ||||| || || || || ||||||||| | || | ||||| || Sbjct 695793 CAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAAT 695734 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAG 31407 ||||||||||| || |||||||| |||| ||||| Sbjct 695733 ATTCAAAAAGAGTCAACTCTTCACTTGGTTCTTAG 695699 >seq1 Length=1856900 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| |||||||||||||| ||||| |||| || || || |||||| | || || || | Sbjct 768031 AAAAATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACTATCACCTTGGAGGTGGAGTC 768090 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | | || | ||||| || | || ||| ||||| || | || || || Sbjct 768091 TTCCGATACCATTGACAATGTCAAGCAAAAGATCCAGGATAAGGAGGGAATTCCACCTGA 768150 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || ||| | | || || ||||| || |||||||| || || ||| || || || Sbjct 768151 TCAACAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTAGAACTTTGTCTGACTA 768210 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || ||||| |||||||| |||| | ||| |||| || |||| Sbjct 768211 CAACATTCAGAAGGAATCTACTCTTCACTTGGTCTTGAGATTGAGAGGAGGTA 768263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766232837600