Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05-
08] 30 sequences; 12,880,761 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq26 168 6e-37
seq23 152 5e-32
seq12 145 7e-30
seq25 118 9e-22
seq1 105 6e-18
>seq26
Length=1546578
Score = 168 bits (186), Expect = 6e-37
Identities = 423/635 (67%), Gaps = 6/635 (1%)
Strand=Plus/Minus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
||| |||| ||||| ||||| | |||||| ||||| | |||||| |||| |||| ||
Sbjct 307271 GAGCCAAGGTTGCACACGGCGATCTCGTCCTTGGATGAGTACTCGACAACTTCGCAGCAG 307212
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCG-ATTGCACGAATC 23145
|||||| |||| || || || | || |||| || | |||| ||||||||||||
Sbjct 307211 AGATTGGACGACTTGATGGTTCCAAGGTTCTTCTGATT-CGACTTCGCATTGCACGAATC 307153
Query 23146 CTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCG-CTCGCCACA 23204
||| || || | | | ||||| || |||||| ||| || | | ||| ||| |||||
Sbjct 307152 CTTATAAAGGAGGAAAGGCGTTCCTGTCTCGGTCTGAGAATAAAGAATCCTCTC-CCACA 307094
Query 23205 TAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACG 23264
| | || | | | || | |||| |||||||| ||||||| | ||||| |
Sbjct 307093 CCTTGCGGGCCTTCAACTGCCGTAGATACCGGCCTTCTTTTTCGTACTGTGTGTACAGGG 307034
Query 23265 CGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGG-ACACATGAGA 23323
||||| |||| ||| | ||| | || || || | | | ||| | | | ||||
Sbjct 307033 ATTCAAACTCGGGACCCCATTTGTCTGATAGTCCTGGTGCT-GTATCCTCAGAAAAGAGA 306975
Query 23324 CTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383
|||||||| |||||| | || || ||||| || || ||||| ||||| | || ||
Sbjct 306974 CTCCACATCTCGTCATTCTTCACACGCCTCATGAACAGGTCCGGAATCCACAACGCATAA 306915
Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443
|| || || | || |||| ||||| |||||| |||||| || | || | || |||
Sbjct 306914 AAGAGATCCCTTGCCCGCATTTCCTCCTTGCCGTGGTTCTTCTTGAGGTCGAGGAATTCC 306855
Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503
| | ||||||||||| ||||| || || | | || || || | ||| || ||
Sbjct 306854 AGAATATCCGCATGCCAGGGCTCAAGATACGCACATATTGCACCAGGACGCTTGTTTCCA 306795
Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563
||||| || ||||| || ||| |||| |||| || ||||| || || | || |
Sbjct 306794 CCCTGGTCAACGTACTTTGCTGTGCTGTTAAACACCCTGAGCATGGGAACAATGCCACTT 306735
Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623
|||| ||| ||| | | || || || ||| |||||| | ||| |
Sbjct 306734 GACGTTCCGTTGGTGCCAGAAATGTACGTTCCAGCTGTTCGGACGTTGCTCAGGTGCATT 306675
Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCA 23658
||||| || ||| | | ||| |||||||| |||||
Sbjct 306674 CCTATTCCACCGGCAGCTTTTGATATCATTGCGCA 306640
>seq23
Length=1356690
Score = 152 bits (168), Expect = 5e-32
Identities = 595/922 (65%), Gaps = 24/922 (3%)
Strand=Plus/Plus
Query 57537 AGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAA 57596
||||| || ||||| || ||| | || || || ||| | |||||||| ||||| ||
Sbjct 990643 AGATTCGTGATGTTCCCTATTCAGTACGATGATATATGGCAAATGTACAAGAAGGCCGAG 990702
Query 57597 GCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCC 57656
|| || || ||||| | ||| || | || || || |||||| ||| ||| ||| || |
Sbjct 990703 GCCTCTTTCTGGACTGCCGAGGAGATCGATCTCTCAAAGGATTTGACCGACTGGAATGAC 990762
Query 57657 C---TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCC 57713
| || | ||||||| | || || | || ||||| || || ||||| ||
Sbjct 990763 AAGATGAATGCCAATGAGAGATACTTCATCTCTCGTGTCTTGGCCTTCTTTGCCGCTTCA 990822
Query 57714 GATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAG-AAGTGCAAGTGACGGA 57772
||||||||||| | |||||||||| | | | ||| ||| | ||||| | | ||
Sbjct 990823 GATGGTATTGTCGATGAGAATTTGG-CACAGAACTTTATGAAGCAGGTGCAGTTACCTGA 990881
Query 57773 GGCGAGATGCTTTTACGGATTTCAAG----TGGCCATTGAAAACGTGCATTCAGAAATGT 57828
||| ||| ||| || || |||| || ||| |||| ||| | || || || | |
Sbjct 990882 GGCAAGAGCCTTCTATGG-TTTCCAGATTATGG---TTGAGAACATCCACTCTGAGACTT 990937
Query 57829 ATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGAC-TGTTCAAC 57887
|||| || | ||||| || || | | ||||| | ||| || || |||||||
Sbjct 990938 ATTCCCTTTTGATCGAGACCTATATCACTGACAAGAAAGAG-TCCGACTACTTGTTCAAT 990996
Query 57888 GCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA 57947
|| ||| | ||||| || | || ||||||| ||| | | | |||||||||
Sbjct 990997 GCCATCCATACAATTCCACCTATTAAGGAGAAGGCTTTATGGGCTTTGAGATGGATAAAC 991056
Query 57948 AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTC 58007
| | || || || ||||| | | || || || ||| | |||||| | ||
Sbjct 991057 AATGATGATGCTTTGTATGCTGAGAGATTGGTTGCTTTTGCTGCCATTGAAGGTGTGTTT 991116
Query 58008 TTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTG 58067
|| || || ||||| | || || ||| ||||||| | || ||||||| |||||
Sbjct 991117 TTCTCTGGATCGTTTGCCTCCATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCAGGCCTT 991176
Query 58068 ACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTA 58127
||||| |||||| | || | | || |||||||| ||||| |||||||| |||||
Sbjct 991177 ACGTTCTCTAACGAGCTTATCTGCAGAGATGAGGGTCTACATACCGATTTTGCATGCCTT 991236
Query 58128 ATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAG 58187
||| ||||||| | || ||| | || ||| | || || ||||||
Sbjct 991237 TTGTTCTCTCACTTGAAGCATCCACCAAGTAAGGTCATTATCAAGAGAATCATGACCGAG 991296
Query 58188 GCGGTCGCGATCGAAAATGAGTTTGT-CACCGAAGCCCTACCGGTGGCCATGCTCGGTAT 58246
|| || || || || | ||| | | || || || || || | | ||||||||
Sbjct 991297 GCTGTTAATATTGAGAA-AACTTTCTGGAGAGACGCTCTTCCAGTTTCTTTACTCGGTAT 991355
Query 58247 GAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT 58306
|||| ||| ||||| | ||||| ||||||| ||||||||| | | ||| | |
Sbjct 991356 GAACTTCGATATGATGGCTCAGTACGTTGAGTTCTGTGCCGACAGGTTGCTTATCGCATT 991415
Query 58307 --GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCG 58364
||| |||| || ||||||| | |||||| || || || ||| | |||||
Sbjct 991416 GGGATGCGAGAAGGT--TTACAACGTCACAAATCCATTCGACTTCATGGAAAATATCTCC 991473
Query 58365 CTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTG 58424
| | || ||||| || || || || || | |||| ||| || || || ||| ||
Sbjct 991474 TTGGCTGGTAAGACTAATTTCTTTGAGAAGAGAGTTTCCGACTACCAGAAGGCCGGTGTT 991533
Query 58425 ATGAGCGGTAACAAGTTGGAGG 58446
||| | || |||||||||
Sbjct 991534 ATG---GCCAAGGAGTTGGAGG 991552
>seq12
Length=1432871
Score = 145 bits (160), Expect = 7e-30
Identities = 350/522 (67%), Gaps = 11/522 (2%)
Strand=Plus/Plus
Query 22154 TAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT 22213
|| ||||| || ||||||| ||| ||||||| | ||||| || || || ||||||||
Sbjct 861857 TAGTACATACCTGTCTTCAAGCCCTTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTA 861916
Query 22214 CCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCT 22273
|| | | || | | || | | || | || ||| ||| ||| | || ||
Sbjct 861917 CCCATAGTTGGTGACTGCAAATGGATGTTCATAGATTGAGACTGGCAGATGTATGCGCCC 861976
Query 22274 CGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGT 22333
| ||| || |||||| || | | | || || ||||| || ||| ||||||
Sbjct 861977 CTATCAGCAGCCATAACGATGACAGACTTCTGAGAAATCTCCCAAACTGTCCTGTACAAC 862036
Query 22334 TGCCTGATCTCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTATTGTGTATGAT 22392
| | |||||| || ||| | || || | | |||| | || ||||| | ||| |||||
Sbjct 862037 TTCTTGATCT-TATCGGGAACGTTTGGCAAGTTCTGAATAGAACCGTTGTCGTGAATGAT 862095
Query 22393 CAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACG 22452
|| || || || | ||||||||| | || ||| | | | |||| | | || | | |
Sbjct 862096 GAAGTTCTTCATTGCATCGTTCCATATTCCCATGTCAATAAGATCTCTCAACATGTAAGG 862155
Query 22453 GTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAACG 22511
|| || | || || || || | ||||| | | | || || ||||| || ||||| |
Sbjct 862156 ATTAACGATCTGGAATTCACCAG-CAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATG 862214
Query 22512 GTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCA 22571
|||||||| |||| || | |||| ||||| | || ||||| |||||||| || ||||
Sbjct 862215 GTTCGAAACATTCGTTATAACCCATAATCTGGGAAGTAGAAGCAGTCGGCATAGGTGCCA 862274
Query 22572 ACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTT--GAGCATCGACCAGTC 22629
|| || |||||||| | || ||| | ||| ||| ||| ||| ||| ||||||
Sbjct 862275 CCAAAAGAGAGTTTCTAAGACCAGTCTTGGCAATCTTAGCCTTCAGAGTATC--CCAGTC 862332
Query 22630 CCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671
||||||||| | ||| | |||| ||||||||| |||||
Sbjct 862333 CCACAGATCCGTAGGCTT---TTTGTTCCACATATCATATTG 862371
Score = 107 bits (118), Expect = 2e-18
Identities = 170/241 (71%), Gaps = 2/241 (1%)
Strand=Plus/Minus
Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245
|||||| |||||||||||||| |||||| |||| || || || |||||| | || || ||
Sbjct 1192955 ATCAAA-ATGCAAATTTTCGTTAAGACTTTGACCGGTAAGACTATCACCTTGGAGGTGGA 1192897
Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305
| ||||||| | || | ||||| || | || |||||||| || | || ||
Sbjct 1192896 GTCTTCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAGGGAATCCCACC 1192837
Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365
|| |||||| | | || || ||||| || |||||||| || | ||| || ||
Sbjct 1192836 AGATCAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACTTTGTCGGA 1192777
Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT-AGAA 31424
|| ||||| || || || || |||||||| |||| | ||| |||| || ||| ||||
Sbjct 1192776 CTACAACATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGAGATTGAGAGGTGGTAAGAA 1192717
Query 31425 G 31425
|
Sbjct 1192716 G 1192716
>seq25
Length=1112461
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||||||||| || ||||| | || || || || ||||| | || |||||| | ||
Sbjct 696598 CATGCAAATTTTTGTGAAGACATTAACTGGAAAGACAATCACGTTAGAGGTTGAATCTTC 696539
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | |||| | || || || | || || |||||||| | || || |||||
Sbjct 696538 TGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCA 696479
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | | ||||| || || || || ||||||||| | || | ||||| ||
Sbjct 696478 GCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAA 696419
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||||||||| || ||||||||| |||| ||||| ||||||| ||
Sbjct 696418 TATTCAAAAAGAGTCTACTCTTCATTTGGTCCTTAGGTTGAGGGGAGG 696371
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || || || |||| || || || ||||| | || |||||| | ||
Sbjct 696141 ATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCT 696082
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| | || || || | || || |||||||| | || || ||||||
Sbjct 696081 GACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAG 696022
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | | ||||| || || || || ||||||||| | || | ||||| ||
Sbjct 696021 CAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAAT 695962
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||||||||| || ||||||||| |||| ||||| ||||||| ||
Sbjct 695961 ATTCAAAAAGAGTCTACTCTTCATTTGGTCCTTAGGTTGAGGGGAGG 695915
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || || || |||| || || || ||||| | || |||||| | ||
Sbjct 696369 ATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCT 696310
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| | || || || | || || |||||||| | || || ||||||
Sbjct 696309 GACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAG 696250
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | | ||||| || || || || ||||||||| | || | ||||| ||
Sbjct 696249 CAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAAT 696190
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||||||||| || ||||||||| |||| ||||| ||||||| ||
Sbjct 696189 ATTCAAAAAGAGTCTACTCTTCATTTGGTCCTTAGGTTGAGGGGAGG 696143
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || || || |||| || || || ||||| | || |||||| | ||
Sbjct 695913 ATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTCT 695854
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| | || || || | || || |||||||| | || || ||||||
Sbjct 695853 GACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCAG 695794
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | | ||||| || || || || ||||||||| | || | ||||| ||
Sbjct 695793 CAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAAT 695734
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAG 31407
||||||||||| || |||||||| |||| |||||
Sbjct 695733 ATTCAAAAAGAGTCAACTCTTCACTTGGTTCTTAG 695699
>seq1
Length=1856900
Score = 105 bits (116), Expect = 6e-18
Identities = 163/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248
||| |||||||||||||| ||||| |||| || || || |||||| | || || || |
Sbjct 768031 AAAAATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACTATCACCTTGGAGGTGGAGTC 768090
Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
||||| | | || | ||||| || | || ||| ||||| || | || || ||
Sbjct 768091 TTCCGATACCATTGACAATGTCAAGCAAAAGATCCAGGATAAGGAGGGAATTCCACCTGA 768150
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368
|| ||| | | || || ||||| || |||||||| || || ||| || || ||
Sbjct 768151 TCAACAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTAGAACTTTGTCTGACTA 768210
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||||| || ||||| |||||||| |||| | ||| |||| || ||||
Sbjct 768211 CAACATTCAGAAGGAATCTACTCTTCACTTGGTCTTGAGATTGAGAGGAGGTA 768263
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766232837600
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