Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq12 381 7e-101 seq23 185 1e-41 >seq12 Length=1432871 Score = 381 bits (422), Expect = 7e-101 Identities = 1397/2146 (65%), Gaps = 77/2146 (4%) Strand=Plus/Plus Query 62046 GTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTT 62102 |||||||| |||| |||||| || || ||||||| |||||||| || || || Sbjct 861818 GTGAATTGGATGGCACGAGCGGCAGCCTGT---GTACGTAAGTAGTACATACCTGTCTTC 861874 Query 62103 AGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGC 62161 | || |||| || ||||| ||||| || | ||| ||| | | |||| Sbjct 861875 AAGCCCTTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTACCCATAGTTGGTGACTGC 861934 Query 62162 TATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTT 62221 | |||||| |||||||||||| || |||| | || ||||| || |||||||| Sbjct 861935 AA-ATGGATGTTCATAGATTGAGACTGGCAGATGTATGCGCCCCTATCAGCAGCCATAAC 861993 Query 62222 TATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTG 62280 |||| | ||| || | ||| ||||||| || | || |||| ||| || | || | Sbjct 861994 GATGACAGACTTCTGAGAAATCTCCCAAACTGTCCTGTACAACTT-CTTGATCTTATCGG 862052 Query 62281 GAAGGTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCAT 62337 ||| ||||| |||||||| || || || || || ||||| || ||| Sbjct 862053 GAACGTTTGGCAAGTTCTGAATAGAACCGTTGTCGTGAATGATGAAGTTCTTCATTGCAT 862112 Query 62338 CATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATT 62397 | ||||||| | | || | | | |||| | | | || ||||| | ||||||| Sbjct 862113 CGTTCCATATTCCCATGTCAATAAGATCTCTCAACATGTAAGGATTAACGATCTGGAATT 862172 Query 62398 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTAT 62457 | |||| | ||||| | || || ||| ||| | ||||| | | || |||| Sbjct 862173 CACCAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGTTCGAAACATTCGTTAT 862232 Query 62458 TTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62517 |||| ||| || | ||| || ||||||||||||||||||||||| | | ||||||| Sbjct 862233 AACCCATAATCTGGGAAGTAGAAGCAGTCGGCATAGGTGCCACCAAAAGAGAGTTTCTAA 862292 Query 62518 GACC-GTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG---- 62572 |||| || | | || ||| | || ||| ||||| | ||| ||||||| || Sbjct 862293 GACCAGTCTTGGCA-ATCTTAGCCTTCAGAGTATCCCAGTCCCACAGATCCGTAGGCTTT 862351 Query 62573 ---TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATA 62629 | | ||| ||||||||||||||| || || || ||| |||| Sbjct 862352 TTGTTCCACATATC-------ATATTGTAGAATACCCTTTGAAGCTGGAGAGCCTTCATA 862404 Query 62630 TGTATCATATGGTCCTTCCTTCTCAGCTAGTT--TACAACTCGCCTCTAATGCACCGTAA 62687 ||| | ||| | || || | | |||| || | | | || ||| |||||| ||| | Sbjct 862405 TGTCTGATAAGTACCCTCTTCCACAGCAAGCTGGTTGGATTC--CTCCAATGCAGCGTGA 862462 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 || | ||| ||||| |||| | || || || |||| || || | ||||| || || Sbjct 862463 TACAAGGTCTCAAATATCTGAATGTTAAGCTCCCGTGCATCTGGACAGTCAAAAGG-TAG 862521 Query 62748 TTTAAG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62806 | |||| | | || | || || | || || | ||||| | | |||||||| | ||| Sbjct 862522 TCTAAGCATGAAGAAGGTATCAGCAAGACCCTGGATACCAAGAGCAATAGGTCTGTTTCT 862581 Query 62807 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62866 | | || ||| | || || |||| ||||| ||||| | || |||| || | Sbjct 862582 CATGTTGGAGTTACGGGCCTCAGGAACTGGATAGTAATTTCTGTCAATAACACGGTTTAA 862641 Query 62867 ATTTCTG---ACAA--TTACT----TTGACCACATCCTTCAGTTTGAGAAAATCAA--AT 62915 || | | |||| ||| | ||| || | || | |||| | | ||| || Sbjct 862642 GTTACGGGTAACAACTTTAGTAATCTTGTGCAACTTCTCGAAGTTGA-ACCAGCAATGAT 862700 Query 62916 CGCCCATCT-ATT--ACAAA--CATGTTCAATGCAACAGATG-CCAGATTACACACGGCT 62969 | | ||||| | | ||||| || | ||| ||| | || ||| |||||||| | Sbjct 862701 C-CTCATCTGACTCAACAAAGGCAGG--CAAA-CAAATGTTGGCCAAGTTACACACACCA 862756 Query 62970 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTT 63029 ||||||| | | | || | | | |||| ||| | || | | ||||| || Sbjct 862757 ACCTCATCTGGAGAGGAGTACTCGACAACCTCACAGCACAAGTTCGAAGATTTGATGGTA 862816 Query 63030 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTA 63089 || || || | |||||||||||| | ||||| |||||||| || | ||||| || ||| Sbjct 862817 CCCAAGTTCTTCTGATTACTCTTTCTATTACAAGCATCCTTGTAGATCATGAAAGGTGTA 862876 Query 63090 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGA 63148 |||||||| |||||| || | |||| | ||| | | || ||||||| | | | Sbjct 862877 CCAGTTTCTGTCTGAGCCTCCAAAATCTGGTACCATAACTTCT-GAGCCTTCACTGTTCT 862935 Query 63149 T-TTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAA 63207 | || | ||||| || | ||||| |||| |||||| ||||||||||| || ||| Sbjct 862936 TCTTCCACGTCCTT-CTTTCTCGTAACGAGTGTACAATTTCTCGAACTCGTCACCGTAAA 862994 Query 63208 CAT-TGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 63266 ||| || | || | | | || ||| | | ||| | ||||| ||| || | Sbjct 862995 CATCTGAGAGACCTGGTGCCT-CAGAAGGAGAGAACAATGTCCACTTGTCGTTGCTCTCC 863053 Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 || || |||||||| | ||| ||||||||||||||| ||| | ||| | || | | Sbjct 863054 ACACGCTTCATAAATAAATCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCACGAATC 863113 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 ||||| || || ||||||| | | ||||| || | | ||||||| |||||| || Sbjct 863114 TCCTCTTTACCATGATTCTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGC 863173 Query 63387 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63446 |||||||| || || || | || || | ||||| || || ||||| | |||||||| Sbjct 863174 TCCAAGTAAATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGATCCACATATCTAGCA 863233 Query 63447 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63506 || | || | || | | ||| ||||| |||||||| ||| ||||||| ||||||| Sbjct 863234 GTACTGTTGAACACACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCA 863293 Query 63507 ATATAGCCTCCACTGGCACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTT 63565 ||||| ||| ||| |||||| || ||| ||| ||||| || || || || | || Sbjct 863294 ATATACGAACCAGTGGAACGAATGTTGTGAATGTGA-AGACCAATACCACCAGCAGTCTT 863352 Query 63566 AGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCAT 63625 ||| || || || || |||| || || || ||||| ||||| || ||||| |||| Sbjct 863353 AGAAATCAAAGCACACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCAT 863412 Query 63626 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGG 63685 || || || || ||||| || | || | ||| || ||||| || || || || Sbjct 863413 TGCAACTAAGAAGCATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGG 863472 Query 63686 AGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG-TCTCAATAGCTGAGTCTA 63744 || || || || || || | | || | | | || | | ||| | || || | Sbjct 863473 TGATGCATGTGTGAAGTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTAG-GAA 863531 Query 63745 TATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAA 63804 |||| |||||| || || || || | ||| | | ||| || ||||||||| ||| Sbjct 863532 TATCATCACCATGAATACCGACGGCCACTCTCATAAGAAGGTGTTGTGGTCTTTCAGCAA 863591 Query 63805 TTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 63864 || || ||| |||||| || || ||||||||| || |||||||| ||||||| Sbjct 863592 CCTTACCATTAATTCTCAACAGATAAGAACGTTCCAAAGTCTTGAAACCAAAGTAGTTGT 863651 Query 63865 ATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTA 63924 | ||||| || |||||| |||| | || || | || |||||||| | |||| | Sbjct 863652 AACTGAAGTCACGGTCGTAATTAATGGCTGAGTTCAACTCATCCTTATGCTCCATAACAA 863711 Query 63925 TATCCATGGTAATACT----TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACA 63980 | | ||| || ||||| || ||||| | ||| | || ||||| Sbjct 863712 T----CTTATAAACCTCATCAGAAATCATAGGAGACTTCTTCTGGGTCTTTGGATTGTAG 863767 Query 63981 TAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTT 64040 |||||| ||| |||||| || || ||| || | || || || | |||||| | |||| Sbjct 863768 TAGTTGTATAGATCCTCTATAACATCAGAGAAAGGCTTCTTAGTCTGCTTGTGCAAATTT 863827 Query 64041 GATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGC 64099 || || || | ||| ||||| | | | ||||| || ||||| ||| || || || || Sbjct 863828 GAGATTGCAAGTCTAGCGGCCAAAGTAGCATAGTCTGGATGCATTGTGGT-CATGTATGC 863886 Query 64100 TGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 64145 ||| |||| || | || | ||||||| || | || || || ||| Sbjct 863887 TGCAGTTTCAGCAGTCAAATTGTCCAACTCAATGGTGGTAACACCA 863932 >seq23 Length=1356690 Score = 185 bits (204), Expect = 1e-41 Identities = 568/866 (66%), Gaps = 18/866 (2%) Strand=Plus/Minus Query 33312 TTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 33371 || || || |||||||| || || |||| || |||||||||||||| || || ||||| Sbjct 991502 TTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAATGGATTT 991443 Query 33372 GTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCT 33431 || || ||||||| || | |||||||| | || ||| || || || ||| || Sbjct 991442 GTGACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGCACAGAACTCA 991383 Query 33432 ATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTA 33491 | || |||||| || | ||||| || | | |||||||||||| | | Sbjct 991382 ACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAGCGTCTCTC 991323 Query 33492 -AGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACT 33550 ||||| | || | |||| || || | || || || | | | | | ||| Sbjct 991322 CAGAAAGTTTTCT-CAATATTAACAGCCTCGGTCATGATTCTCTTGATAATGACCTTACT 991264 Query 33551 CGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTC 33610 |||||||| || || |||| | ||||| |||||| || |||||||| || Sbjct 991263 TGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGACCCTCATC 991204 Query 33611 TCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCA 33670 ||| | || | |||||||| ||||| || || ||||| | || | ||| || | ||| Sbjct 991203 TCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCTTCAACCA 991144 Query 33671 AAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33730 || ||||| || || ||||| || || || | ||||| | |||||||| |||| | Sbjct 991143 GAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAGCAACCAA 991084 Query 33731 TCTCTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 |||||| |||| || |||| |||||| | |||||| ||||||| Sbjct 991083 TCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAGCCTTCTC 991024 Query 33788 TTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTT 33847 || | | || || || | |||||||| || | |||| || || | || | Sbjct 991023 CTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCTTGTCAGT 990964 Query 33848 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 33907 | ||| || ||||||||||| ||| | || || || ||||| |||| ||||| Sbjct 990963 GATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCATAATCTG 990904 Query 33908 AAATCCGTAGAAACATCTAGCCTC-GGTAATCTGCACTTCTG-TACAAAATCGTTC--TG 33963 || || ||||| ||| ||||| ||||| |||||| ||| | || || |||| || Sbjct 990903 GAAACCATAGAAGGCTCTTGCCTCAGGTAA-CTGCAC--CTGCTTCATAA-AGTTCTGTG 990848 Query 33964 CTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 34023 | ||||| |||| || || ||||| || ||||| || ||||| ||| | || | Sbjct 990847 CCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAGAGATGA 990788 Query 34024 AATATTTTTCGTCTGGTGTTAGT----TTATTCCAATCATTGATATCTTTAGATATATCC 34079 | ||| | || | ||| || | | |||||| || | | ||| || || | ||| Sbjct 990787 AGTATCTCTCAT-TGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAGAGATCG 990729 Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 | || || | ||||| || || ||||| ||||| || ||||| | ||| || |||| Sbjct 990728 ATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATATCATCG 990669 Query 34140 TATTGGATTGGGAAAATAACAAATCT 34165 || || || ||||| || || ||||| Sbjct 990668 TACTGAATAGGGAACATCACGAATCT 990643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817363818400