Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05-
08] 30 sequences; 12,880,761 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq12 165 8e-36
seq23 107 2e-18
>seq12
Length=1432871
Score = 165 bits (182), Expect = 8e-36
Identities = 358/536 (67%), Gaps = 0/536 (0%)
Strand=Plus/Plus
Query 38014 TCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTA 38073
|| || || | |||||||||||| || | ||| | || | ||| ||||| | | |
Sbjct 863051 TCCACACGCTTCATAAATAAATCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCACGA 863110
Query 38074 TATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCAT 38133
|| || || || ||||||||| | | ||| ||||| |||||||| |||||
Sbjct 863111 ATCTCCTCTTTACCATGATTCTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAA 863170
Query 38134 GGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTA 38193
|| || | ||||| | || || |||||||| || | ||| || |||| | |||||||
Sbjct 863171 GGCTCCAAGTAAATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGATCCACATATCTA 863230
Query 38194 ACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCG 38253
| || | || | | | | ||| || | |||||| || ||| | || || |||||
Sbjct 863231 GCAGTACTGTTGAACACACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCG 863290
Query 38254 GATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGT 38313
| ||||| | ||| | | || || || || | || || ||||| |||
Sbjct 863291 GCAATATACGAACCAGTGGAACGAATGTTGTGAATGTGAAGACCAATACCACCAGCAGTC 863350
Query 38314 TTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTT 38373
|| || || ||||| || ||||| || ||||| | |||||||| ||| |||||| ||
Sbjct 863351 TTAGAAATCAAAGCACACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTC 863410
Query 38374 ATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTA 38433
|||| | || || || ||||| ||||| |||||| || || || || || ||
Sbjct 863411 ATTGCAACTAAGAAGCATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTT 863470
Query 38434 GGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCT 38493
|| ||||||||| |||| || | | |||| | | ||||| ||| | || | |
Sbjct 863471 GGTGATGCATGTGTGAAGTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTAGGA 863530
Query 38494 ATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549
|||||| | || |||||||| | | || ||||| || | ||||||||||||||
Sbjct 863531 ATATCATCACCATGAATACCGACGGCCACTCTCATAAGAAGGTGTTGTGGTCTTTC 863586
>seq23
Length=1356690
Score = 107 bits (118), Expect = 2e-18
Identities = 548/868 (63%), Gaps = 28/868 (3%)
Strand=Plus/Minus
Query 11363 TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATAT 11422
|| || |||||||||||||| | | || |||| ||||| ||| || |||||
Sbjct 991499 TCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAATGGATTTGTG 991440
Query 11423 ACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATA 11482
|| ||| | || || || || || || | | | || || || || ||| || |
Sbjct 991439 ACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGCACAGAACTCAACG 991380
Query 11483 TACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAA 11542
||||||| ||| | | | |||||||| | | | || |||| ||| || || |
Sbjct 991379 TACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAGCGTCTCTCCAG 991320
Query 11543 AACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGT 11602
|| || || |||||||| || || | || || | | |||| ||||| ||||
Sbjct 991319 AAAGTTTTCTCAATATTAACAGCCTCGGTCATGATTCTCTTGATAATGACCTTACTTGGT 991260
Query 11603 GGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTA 11662
||||| || || |||| | || |||||||| ||||| ||| || |||||
Sbjct 991259 GGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGACCCTCATCTCTG 991200
Query 11663 CTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAAT 11722
| || || || ||||| || || | || |||||||| |||| || || | ||| ||
Sbjct 991199 CAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCTTCAACCAGAAG 991140
Query 11723 ATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTT 11782
|| | ||||| || ||||| || || | || || | || ||||| || || | |||
Sbjct 991139 ATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAGCAACCAATCTC 991080
Query 11783 TCTCCATATA------CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTT 11836
|| |||| | | | ||| | ||||||| | ||||| ||| ||||
Sbjct 991079 TCAGCATACAAAGCATCATCATTGTT---TATCCATCTCAAAGCCCATAAAGCCTTCTCC 991023
Query 11837 TTTACGCATTCCATTGTTTCTATAGCGTTAAATAAAT----GCATTTTTTCTATATTATC 11892
|| | | ||||| | || || || || || | | | | |||| || ||
Sbjct 991022 TTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTC----TTGTC 990967
Query 11893 TCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTT---CCATAGC 11949
| | ||| || || || || | ||| | || || || || || | |||||
Sbjct 990966 AGTGATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCATA-- 990909
Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACAT-CCACATAAAATCTTT 12008
|| || || |||||||| || |||||| | |||| || | | |||||| | | |
Sbjct 990908 -ATCTGGAAACCATAGAAGGCTCTTGCCTCAGGTAACTGCACCTGCTTCATAAAGT-TCT 990851
Query 12009 CCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTA 12068
|| |||||||||| ||||||||||| || ||||| || || | | | | |
Sbjct 990850 GTGCCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAGAGA 990791
Query 12069 TAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAAT 12125
| |||||| | || | | || | | || ||| || ||||| ||||| | ||
Sbjct 990790 TGAAGTATCTCTCATTGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAGAGAT 990731
Query 12126 CTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCAT 12185
| | || || | ||||| ||| ||| | | | || ||||||| ||| |||||||
Sbjct 990730 CGATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATATCAT 990671
Query 12186 GATACTTAATAGGGAAAATAACGAACCT 12213
|||| ||||||||| || ||||| ||
Sbjct 990670 CGTACTGAATAGGGAACATCACGAATCT 990643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468524624303200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |