Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05-
08] 30 sequences; 12,880,761 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq12 351 1e-91
seq23 185 1e-41
>seq12
Length=1432871
Score = 351 bits (388), Expect = 1e-91
Identities = 1381/2136 (65%), Gaps = 57/2136 (3%)
Strand=Plus/Plus
Query 64839 GTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTT 64895
|||||||| |||| |||||| || || ||||||| |||||||| || || ||
Sbjct 861818 GTGAATTGGATGGCACGAGCGGCAGCCTGT---GTACGTAAGTAGTACATACCTGTCTTC 861874
Query 64896 AGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGC 64954
| || |||| || ||||| ||||| || | ||| ||| | | ||||
Sbjct 861875 AAGCCCTTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTACCCATAGTTGGTGACTGC 861934
Query 64955 TATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTT 65014
| |||||| |||||||||||| || |||| | || ||||| || ||||||||
Sbjct 861935 AA-ATGGATGTTCATAGATTGAGACTGGCAGATGTATGCGCCCCTATCAGCAGCCATAAC 861993
Query 65015 TATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTG 65073
|||| | ||| || | ||| ||||||| || | || |||| ||| || | || |
Sbjct 861994 GATGACAGACTTCTGAGAAATCTCCCAAACTGTCCTGTACAACTT-CTTGATCTTATCGG 862052
Query 65074 GAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCAT 65130
||| ||||| |||||||| || || || || || ||||| || |||
Sbjct 862053 GAACGTTTGGCAAGTTCTGAATAGAACCGTTGTCGTGAATGATGAAGTTCTTCATTGCAT 862112
Query 65131 CATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATT 65190
| ||||||| | | || | | | |||| | | | |||||||| | || ||||
Sbjct 862113 CGTTCCATATTCCCATGTCAATAAGATCTCTCAACATGTAAGGATTAACGATCTGGAATT 862172
Query 65191 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTAT 65250
| |||| | ||||| | || || ||| ||| | ||||| | | | || ||||
Sbjct 862173 CACCAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGTTCGAAACATTCGTTAT 862232
Query 65251 TTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 65310
|||| ||| || | ||| || ||||||||||||||||||||||| | | |||||||
Sbjct 862233 AACCCATAATCTGGGAAGTAGAAGCAGTCGGCATAGGTGCCACCAAAAGAGAGTTTCTAA 862292
Query 65311 GACC-GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACA 65369
|||| || | | || ||| | || |||| ||||| | ||| ||||||| ||
Sbjct 862293 GACCAGTCTTGGCA-ATCTTAGCCTTCAGAGTATCCCAGTCCCACAGATCCGTAGGCTTT 862351
Query 65370 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 65429
|||||||||||| || || || ||| ||||||| |
Sbjct 862352 TTGTTCCACATATCATATTGTAGAATACCCTTTGAAGCTGGAGAGCCTTCATATGTCTGA 862411
Query 65430 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 65489
|| | || || | | |||| || | |||| |||||| ||| ||| | |||
Sbjct 862412 TAAGTACCCTCTTCCACAGCAAGCTGGTTGGATTCCTCCAATGCAGCGTGATACAAGGTC 862471
Query 65490 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAG-AG 65548
|| || |||| | || || || |||| || | | ||||| || || | |||| |
Sbjct 862472 TCAAATATCTGAATGTTAAGCTCCCGTGCATCTGGACAGTCAAAAGG-TAGTCTAAGCAT 862530
Query 65549 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 65608
| || | || || | || || | ||||| | | |||||||| | |||| | || ||
Sbjct 862531 GAAGAAGGTATCAGCAAGACCCTGGATACCAAGAGCAATAGGTCTGTTTCTCATGTTGGA 862590
Query 65609 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG-- 65666
| | || || |||| ||||| ||||| | || |||| || | || | |
Sbjct 862591 GTTACGGGCCTCAGGAACTGGATAGTAATTTCTGTCAATAACACGGTTTAAGTTACGGGT 862650
Query 65667 -ACAA--TTACT----TTGACCACATCCTTCAGTTTGAGAAAATCAA--ATCGCTCATCT 65717
|||| ||| | ||| || | || | |||| | | ||| ||| |||||||
Sbjct 862651 AACAACTTTAGTAATCTTGTGCAACTTCTCGAAGTTGA-ACCAGCAATGATC-CTCATCT 862708
Query 65718 -ATT--ACAAA--CATGTTCAATGCAACAGATG-CCAGATTACAAACGGCTACCTCATTA 65771
| | ||||| || | ||| ||| | || ||| ||||| || | |||||||
Sbjct 862709 GACTCAACAAAGGCAGG--CAAA-CAAATGTTGGCCAAGTTACACACACCAACCTCATCT 862765
Query 65772 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 65831
| | | || | | | |||| ||| | || | | |||||||| || || ||
Sbjct 862766 GGAGAGGAGTACTCGACAACCTCACAGCACAAGTTCGAAGATTTGATGGTACCCAAGTTC 862825
Query 65832 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 65891
| |||||||||||| | ||||| |||||||| || | ||||| || |||||||||||
Sbjct 862826 TTCTGATTACTCTTTCTATTACAAGCATCCTTGTAGATCATGAAAGGTGTACCAGTTTCT 862885
Query 65892 ATCTGAGATTCTATAATCGCTTTCCA-GACGACTCGAGCCTTTATTATAGAT-TTGTATC 65949
|||||| || | |||| | ||| || || ||||||| | | | | || |
Sbjct 862886 GTCTGAGCCTCCAAAATCTGGTACCATAACTTCT-GAGCCTTCACTGTTCTTCTTCCACG 862944
Query 65950 TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 66009
|| |||| | ||||| | || |||||| ||||||||||| || |||||| |
Sbjct 862945 TC-CTTCTTTCTCGTAACGAGTGTACAATTTCTCGAACTCGTCACCGTAAACATCTGAGA 863003
Query 66010 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 66069
|| || ||| ||| | | ||| | ||||| ||| || ||| || ||||
Sbjct 863004 GACCTGGTGCCTCAGAAGGAGAGAACAATGTCCACTTGTCGTTGCTCTCCACACGCTTCA 863063
Query 66070 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTC 66129
|||| | ||| ||||||||||||||| ||| ||||| | | | | ||||| || |
Sbjct 863064 TAAATAAATCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCACGAATCTCCTCTTTAC 863123
Query 66130 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATA 66189
| ||||||| | | ||||| || | | |||||| |||||| || |||||||| |
Sbjct 863124 CATGATTCTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGCTCCAAGTAAA 863183
Query 66190 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 66249
| || || | || || | ||||| || || ||||| | |||||||| || | ||
Sbjct 863184 TAGCAATGGCACCTGGTCTCTTGTTACCACCTTGATCCACATATCTAGCAGTACTGTTGA 863243
Query 66250 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 66309
| || | | ||| ||||| ||||| |||||||||||||| || |||| ||||| |
Sbjct 863244 ACACACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCAATATACGAAC 863303
Query 66310 CACTTGCACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 66368
|| | | |||||| || ||| ||| ||||| || || || || | ||||| || ||
Sbjct 863304 CAGTGGAACGAATGTTGTGAATGTGA-AGACCAATACCACCAGCAGTCTTAGAAATCAAA 863362
Query 66369 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 66428
|| || |||| || ||||| ||||| || || ||| ||||| |||| || ||
Sbjct 863363 GCACACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCATTGCAACTAAG 863422
Query 66429 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 66488
|| || ||||| || | || ||| || ||||| || || || || || || ||
Sbjct 863423 AAGCATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGGTGATGCATGT 863482
Query 66489 GTAAACCATTTTTCAGAAAGTAGATTGTACG-TCTCAATAGCTGAGTCTATATCCCATTG 66547
|| || || | | || | | | || | | ||| | || || |||||
Sbjct 863483 GTGAAGTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTAG-GAATATCATCACC 863541
Query 66548 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 66607
|||||| || || || || | ||| | | ||| || ||||||||| | | ||| ||
Sbjct 863542 ATGAATACCGACGGCCACTCTCATAAGAAGGTGTTGTGGTCTTTCAGCAACCTTACCATT 863601
Query 66608 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 66667
||| |||||| || || ||||||||| || |||||||| |||||||| |||||
Sbjct 863602 AATTCTCAACAGATAAGAACGTTCCAAAGTCTTGAAACCAAAGTAGTTGTAACTGAAGTC 863661
Query 66668 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGT 66727
|| |||||| |||| | ||||| | | |||||||| | |||| ||| | |
Sbjct 863662 ACGGTCGTAATTAATGGCTGAGTTCAACTCATCCTTATGCTCCATAAC--AATC--TTAT 863717
Query 66728 AATACT----TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATA 66783
|| || ||||| || ||||| | ||| | || |||||| |||||| |||
Sbjct 863718 AAACCTCATCAGAAATCATAGGAGACTTCTTCTGGGTCTTTGGATTGTAGTAGTTGTATA 863777
Query 66784 AATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTA 66843
|||||| || || ||| || | || || || | ||||| | |||||| | || |
Sbjct 863778 GATCCTCTATAACATCAGAGAAAGGCTTCTTAGTCTGCTTGTGCAAATTTGAGATTGCAA 863837
Query 66844 TTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCG 66902
||||||||| | | | ||||| || ||||| ||| || || || ||||| ||||
Sbjct 863838 GTCTAGCGGCCAAAGTAGCATAGTCTGGATGCATTGTGGT-CATGTATGCTGCAGTTTCA 863896
Query 66903 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 66938
|| | || | ||||||| || | || || || |||
Sbjct 863897 GCAGTCAAATTGTCCAACTCAATGGTGGTAACACCA 863932
>seq23
Length=1356690
Score = 185 bits (204), Expect = 1e-41
Identities = 569/866 (66%), Gaps = 18/866 (2%)
Strand=Plus/Minus
Query 35888 TTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTG 35947
|| || || |||||||| ||||| | || || |||||||||||||| |||||||||||
Sbjct 991502 TTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAATGGATTT 991443
Query 35948 ATAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACA-AATTC 36006
| || || |||| || | |||||||| | || ||| || || || ||| || ||
Sbjct 991442 GTGACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGC-ACAGAACTC 991384
Query 36007 TATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGT 36066
| || |||||| || | ||||| || | | |||||||||||| | |
Sbjct 991383 AACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAGCGTCTCT 991324
Query 36067 A-AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCAC 36125
||||| | || | ||||| || || || || || || | | | | | ||
Sbjct 991323 CCAGAAAGTTTTCT-CAATATTAACAGCCTCGGTCATGATTCTCTTGATAATGACCTTAC 991265
Query 36126 TCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGT 36185
| ||||||| | || || |||| | ||||| |||||| ||||||||||| |
Sbjct 991264 TTGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGACCCTCAT 991205
Query 36186 CTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCC 36245
|||| | || | ||||| || ||||| || || ||||| | || | ||| || | ||
Sbjct 991204 CTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCTTCAACC 991145
Query 36246 AAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAA 36305
| || ||||| ||||| |||||||| || || | ||||| | || ||||| |||| |
Sbjct 991144 AGAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAGCAACCA 991085
Query 36306 GTCTCTCTCCATAACCGGCACTGTCA---TGTATCCACTTTTGAGCCCAATCGGCCTTCT 36362
|||||| |||| ||| ||| | |||||| | |||||| |||||||
Sbjct 991084 ATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAGCCTTCT 991025
Query 36363 TTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTT 36422
|| | | || ||||| | || ||||| || | |||| || || | ||
Sbjct 991024 CCTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCTTGTCAG 990965
Query 36423 TAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTT 36482
| | ||| || || |||||||| ||| | || || || ||||| |||| || |
Sbjct 990964 TGATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCATAATCT 990905
Query 36483 GAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGTACTTCTG-TACAAAATCGTTC--T 36538
| || || ||||| ||| ||||| ||||| ||| || ||| | || || |||| |
Sbjct 990904 GGAAACCATAGAAGGCTCTTGCCTCAGGTAA-CTGCAC--CTGCTTCATAA-AGTTCTGT 990849
Query 36539 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 36598
|| ||||| |||| || || || || || ||||| || ||||| ||| | ||
Sbjct 990848 GCCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAGAGATG 990789
Query 36599 AAATATTTTTCGTTTGGTGTTAGTTT---ATTCCAATCATTGATATCTTTAGATATATCC 36655
|| ||| | || || | | | || |||||| || | | ||| || || | |||
Sbjct 990788 AAGTATCTCTCATTGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAGAGATCG 990729
Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715
| || || | ||||| || || ||||| ||||| || ||||| | ||| || ||||
Sbjct 990728 ATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATATCATCG 990669
Query 36716 TATTGAATTGGAAAAATAACAAATCT 36741
|| ||||| || || || || |||||
Sbjct 990668 TACTGAATAGGGAACATCACGAATCT 990643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658172553185200
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