Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq12 361 8e-95 seq23 185 1e-41 >seq12 Length=1432871 Score = 361 bits (400), Expect = 8e-95 Identities = 1387/2140 (65%), Gaps = 65/2140 (3%) Strand=Plus/Plus Query 78718 GTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTT 78774 |||||||| |||| |||||| || || ||||||| |||||||| || || || Sbjct 861818 GTGAATTGGATGGCACGAGCGGCAGCCTGT---GTACGTAAGTAGTACATACCTGTCTTC 861874 Query 78775 AGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGC 78833 | || |||| || || || ||||| || | ||| ||| | | |||| Sbjct 861875 AAGCCCTTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTACCCATAGTTGGTGACTGC 861934 Query 78834 TATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTT 78893 | |||||| |||||||||||| || |||| | || ||||| || |||||||| Sbjct 861935 AA-ATGGATGTTCATAGATTGAGACTGGCAGATGTATGCGCCCCTATCAGCAGCCATAAC 861993 Query 78894 TATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTG 78952 |||| | ||| || | ||| ||||||| || | || |||| ||| || | || | Sbjct 861994 GATGACAGACTTCTGAGAAATCTCCCAAACTGTCCTGTACAACTT-CTTGATCTTATCGG 862052 Query 78953 GAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTT 79009 ||| ||||| |||||||| || || || || || ||||| || | | Sbjct 862053 GAACGTTTGGCAAGTTCTGAATAGAACCGTTGTCGTGAATGATGAAGTTCTTCATTGCAT 862112 Query 79010 CATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATT 79069 | ||||||| | | || | | | |||| | | | |||||||| | || |||| Sbjct 862113 CGTTCCATATTCCCATGTCAATAAGATCTCTCAACATGTAAGGATTAACGATCTGGAATT 862172 Query 79070 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTAT 79129 | |||| | ||||| | || || ||| ||| ||||||| | |||| |||| Sbjct 862173 CACCAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGTTCGAAACATTCGTTAT 862232 Query 79130 TTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAA 79189 |||| ||| || | ||| || || || ||||||||||||||||| | | ||||||| Sbjct 862233 AACCCATAATCTGGGAAGTAGAAGCAGTCGGCATAGGTGCCACCAAAAGAGAGTTTCTAA 862292 Query 79190 GACC-GTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACA 79248 |||| || | | || ||| | || |||| ||||| ||||| ||||| | || Sbjct 862293 GACCAGTCTTGGCA-ATCTTAGCCTTCAGAGTATCCCAGTCCCACAGATCCGTAGGCTTT 862351 Query 79249 ACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCA 79308 ||||| | |||||||||||||||||| || ||| || ||| ||||| | | Sbjct 862352 TTGTTCCACATATCATATTGTAGAATACCCTTTGAAGCTGGAGAGCCTTCATATGTCTGA 862411 Query 79309 TAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTT 79368 |||| || || | | || | | |||| ||||| ||| ||| | ||| Sbjct 862412 TAAGTACCCTCTTCCACAGCAAGCTGGTTGGATTCCTCCAATGCAGCGTGATACAAGGTC 862471 Query 79369 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAG-AG 79427 || || |||| | || || || |||| ||| | | ||||| || || | |||| | Sbjct 862472 TCAAATATCTGAATGTTAAGCTCCCGTGCATCTGGACAGTCAAAAGG-TAGTCTAAGCAT 862530 Query 79428 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 79487 | || | || || | || || | ||||| | | |||||||| | |||| | || || Sbjct 862531 GAAGAAGGTATCAGCAAGACCCTGGATACCAAGAGCAATAGGTCTGTTTCTCATGTTGGA 862590 Query 79488 AATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTG-- 79545 | || || |||| ||||| ||||| | || |||| || | || | | Sbjct 862591 GTTACGGGCCTCAGGAACTGGATAGTAATTTCTGTCAATAACACGGTTTAAGTTACGGGT 862650 Query 79546 ----ACTAT--TACT-TTGACCACATCCTTTAGTTTGAGAAAATCAA--ATCGTCCATCT 79596 ||| | || | ||| || | || | |||| | | ||| ||| || |||| Sbjct 862651 AACAACTTTAGTAATCTTGTGCAACTTCTCGAAGTTGA-ACCAGCAATGATCCTC-ATCT 862708 Query 79597 -ATT--ACAAA--CATGTTCAACGCGACAGATG----CCAGATTACAAACGGCTACCTCA 79647 | | ||||| || | ||| ||| ||| ||| ||||| || | |||||| Sbjct 862709 GACTCAACAAAGGCAGG--CAA----ACAAATGTTGGCCAAGTTACACACACCAACCTCA 862762 Query 79648 TTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAA 79707 | | | | || | | | ||| ||| | ||| | | || ||||| || || Sbjct 862763 TCTGGAGAGGAGTACTCGACAACCTCACAGCACAAGTTCGAAGATTTGATGGTACCCAAG 862822 Query 79708 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTT 79767 || | |||||||||||| | ||||| |||||||| || | ||||| || ||||||||| Sbjct 862823 TTCTTCTGATTACTCTTTCTATTACAAGCATCCTTGTAGATCATGAAAGGTGTACCAGTT 862882 Query 79768 TCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTA 79826 || |||||| || | |||| | ||| | | || ||||||| | | | ||| | Sbjct 862883 TCTGTCTGAGCCTCCAAAATCTGGTACCATAACTTCT-GAGCCTTCACTGTT--CTTCTT 862939 Query 79827 TCTCTT--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCG 79884 | | | |||| | ||||| | || || ||| ||||||||||| || ||||||| Sbjct 862940 CCACGTCCTTCTTTCTCGTAACGAGTGTACAATTTCTCGAACTCGTCACCGTAAACATCT 862999 Query 79885 TCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGT 79944 | || || || |||| | | ||| | ||||| | | || || || Sbjct 863000 GAGAGACCTGGTGCCTCAGAAGGAGAGAACAATGTCCACTTGTCGTTGCTCTCCACACGC 863059 Query 79945 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCG 80004 |||||||| | ||| ||||||||||||||| ||| | ||| | | | | |||||| Sbjct 863060 TTCATAAATAAATCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCACGAATCTCCTCT 863119 Query 80005 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 80064 || || ||||||| | | ||||| || | | ||||||| |||||| || |||||| Sbjct 863120 TTACCATGATTCTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGCTCCAAG 863179 Query 80065 TATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 80124 || || || || | || |||| ||||| || || ||||| | |||||||| || | Sbjct 863180 TAAATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGATCCACATATCTAGCAGTACTG 863239 Query 80125 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 80184 || | || | | ||| ||||| ||||| |||||||||||||| || |||| ||||| Sbjct 863240 TTGAACACACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCAATATAC 863299 Query 80185 CTTCCACTGGCACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGAT 80243 ||| ||| |||||| || ||| ||| ||||| || || || || | ||||| || Sbjct 863300 GAACCAGTGGAACGAATGTTGTGAATGTGA-AGACCAATACCACCAGCAGTCTTAGAAAT 863358 Query 80244 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAG 80303 || || || |||| || ||||| ||||| || || || ||||| |||| || Sbjct 863359 CAAAGCACACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCATTGCAAC 863418 Query 80304 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 80363 || || || ||||| || | || ||| || ||||| || || || || || || Sbjct 863419 TAAGAAGCATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGGTGATGC 863478 Query 80364 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACG-TCTCAATAGCTGATTCTATATCCC 80422 || || || || | | |||| | | || | | ||| | || | ||||| Sbjct 863479 ATGTGTGAAGTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTA-GGAATATCAT 863537 Query 80423 ATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 80482 |||||| || || || || | ||| | | ||| || ||||||||| | | ||| Sbjct 863538 CACCATGAATACCGACGGCCACTCTCATAAGAAGGTGTTGTGGTCTTTCAGCAACCTTAC 863597 Query 80483 TATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 80542 ||| ||| |||||| ||||| ||||||||| || |||||||| |||||||| | Sbjct 863598 CATTAATTCTCAACAGATAAGAACGTTCCAAAGTCTTGAAACCAAAGTAGTTGTAACTGA 863657 Query 80543 AGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCA 80602 |||| || |||||| |||| | ||||| | | |||||||| | |||| ||| Sbjct 863658 AGTCACGGTCGTAATTAATGGCTGAGTTCAACTCATCCTTATGCTCCATAAC--AATC-- 863713 Query 80603 TGGTGATACT----TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTG 80658 | | | || ||||| || ||||| | ||| | || ||||| |||||| Sbjct 863714 TTATAAACCTCATCAGAAATCATAGGAGACTTCTTCTGGGTCTTTGGATTGTAGTAGTTG 863773 Query 80659 AATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACG 80718 ||| |||||| || || ||| || | || || || | |||||| | |||||| | Sbjct 863774 TATAGATCCTCTATAACATCAGAGAAAGGCTTCTTAGTCTGCTTGTGCAAATTTGAGATT 863833 Query 80719 GCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTAT 80777 || | ||| ||||| ||| | ||||| |||||||| ||| || || || ||||| | Sbjct 863834 GCAAGTCTAGCGGCCAAAGTAGCATAGTCTGGATGCATTGTGGT-CATGTATGCTGCAGT 863892 Query 80778 TTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 80817 ||| || | || | ||||||| || | || || || ||| Sbjct 863893 TTCAGCAGTCAAATTGTCCAACTCAATGGTGGTAACACCA 863932 >seq23 Length=1356690 Score = 185 bits (204), Expect = 1e-41 Identities = 569/866 (66%), Gaps = 18/866 (2%) Strand=Plus/Minus Query 49690 TTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 49749 || || || |||||||| || || |||| || |||||||||||||| || || ||||| Sbjct 991502 TTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAATGGATTT 991443 Query 49750 GTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACA-AATTC 49808 || || || |||| || | |||||||| | || ||| || || || ||| || || Sbjct 991442 GTGACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGC-ACAGAACTC 991384 Query 49809 TATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGT 49868 | || |||||| || | ||||| || | | |||||||||||| | | Sbjct 991383 AACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAGCGTCTCT 991324 Query 49869 A-AGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCAC 49927 ||||| | || | |||| || || || || || || | | | | | || Sbjct 991323 CCAGAAAGTTTTCT-CAATATTAACAGCCTCGGTCATGATTCTCTTGATAATGACCTTAC 991265 Query 49928 TCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGT 49987 | ||||||||| || || |||| | ||||| |||||| || |||||||| | Sbjct 991264 TTGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGACCCTCAT 991205 Query 49988 CTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCC 50047 |||| | || || ||||| || ||||| || || ||||| | || | ||| || | || Sbjct 991204 CTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCTTCAACC 991145 Query 50048 AAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAA 50107 | || ||||| ||||| || ||||| || || | ||||| | || ||||| ||||| | Sbjct 991144 AGAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAGCAACCA 991085 Query 50108 GTCTCTCTCCATAACTGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGGCCTTCT 50164 |||||| |||| || |||| |||||| | |||||| ||||||| Sbjct 991084 ATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAGCCTTCT 991025 Query 50165 TTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTT 50224 || | | || || || | |||||||| || | |||| || || | || Sbjct 991024 CCTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCTTGTCAG 990965 Query 50225 TAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCT 50284 | | ||| || ||||||||||| ||| | || || || ||||| |||| |||| Sbjct 990964 TGATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCATAATCT 990905 Query 50285 GAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGCACTTCTG-TACAAAATCGTTC--A 50340 | || || ||||| ||| ||||| ||||| |||||| ||| | || || |||| Sbjct 990904 GGAAACCATAGAAGGCTCTTGCCTCAGGTAA-CTGCAC--CTGCTTCATAA-AGTTCTGT 990849 Query 50341 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 50400 || ||||| |||| || || || || || ||||| || ||||| ||| | || Sbjct 990848 GCCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAGAGATG 990789 Query 50401 AAATGTTTTTCGTTGGGTGTTAGTTT---ATTCCAATCATTGATATCTTTAGATATATCT 50457 || | | | || |||| | | || |||||| || | | ||| || || | ||| Sbjct 990788 AAGTATCTCTCATTGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAGAGATCG 990729 Query 50458 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 50517 | || || | ||||| || || ||||| ||||| || ||||| | ||| || |||| Sbjct 990728 ATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATATCATCG 990669 Query 50518 TATTGGATTGGGAAAATAACAAATCT 50543 || || || ||||| || || ||||| Sbjct 990668 TACTGAATAGGGAACATCACGAATCT 990643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268530649200