Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq23 165 8e-36 >seq23 Length=1356690 Score = 165 bits (182), Expect = 8e-36 Identities = 584/902 (65%), Gaps = 19/902 (2%) Strand=Plus/Minus Query 13595 AACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAA 13654 |||||| || |||||||| ||||| ||||| ||| || ||||||||||| || || || Sbjct 991509 AACTCTCTTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAA 991450 Query 13655 TGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAA 13713 ||||||| | ||| | | || || || || || | | | | || || || || ||| Sbjct 991449 TGGATTTGT-GACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGCAC 991391 Query 13714 TAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTA 13773 ||||||| || |||| ||| | ||| | |||||||| | || || |||| Sbjct 991390 AGAACTCAACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAG 991331 Query 13774 TATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCT 13833 | | | || ||| || ||| |||||||| | || || | | ||||| Sbjct 991330 CGTCTCTCCAGAAAGTTTTCTCAATATTAACAGCCTCGGTCATGATTCTCTTGATAATGA 991271 Query 13834 CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13893 | ||| || |||| || | || || | | || |||||||| ||| || | Sbjct 991270 CCTTACTTGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGAC 991211 Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| | ||||| ||||| || || || | ||||||||||| |||| || | Sbjct 991210 CCTCATCTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCT 991151 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | ||||| || || | ||||| || || || || || | || |||| |||||||| | Sbjct 991150 TCAACCAGAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAG 991091 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | | |||| || || || | || | | || ||||||| | ||||||| || Sbjct 991090 CAACCAATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAG 991031 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAG 14133 || | |||||| ||||| | || ||||| || || || || |||||| Sbjct 991030 CCTTCTCCTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCT 990971 Query 14134 TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTT---CCA 14190 | | || || || || || | | | ||| | |||||||| ||||| | ||| Sbjct 990970 TGTCAGTGATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCA 990911 Query 14191 TAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATC 14250 || ||||| |||||||| ||| ||| || || | | || || | | ||| Sbjct 990910 TA---ATCTGGAAACCATAGAAGGCTCTTGCCTCAGGTAACTGCACCTGCTTCATAAAGT 990854 Query 14251 TTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTT 14310 | | |||||||| |||| || |||||||| ||| ||||| || ||||| | Sbjct 990853 TCTGTGCCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAG 990794 Query 14311 TAATAAAGTATTGCTCTTCATTG---TTGAGTTT---TTTCCAATCGGATAAATCCTTAG 14364 || |||||| ||| |||||| || | || ||||| |||| |||||||| | Sbjct 990793 AGATGAAGTAT--CTC-TCATTGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTG 990737 Query 14365 AAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATA 14424 | ||||| | || || | ||||| ||| || | || || || |||||| ||||| Sbjct 990736 AGAGATCGATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATA 990677 Query 14425 TTTCTTTATATAATATAGGAAAAACTACAAATCTCGAAGATGTT-TCTTTAAGAATTGGT 14483 | || | || ||||| || | || ||||| | |||||| || || || | ||| Sbjct 990676 TATCATCGTACTGAATAGGGAACATCACGAATCT-GTGGATGTTCTCCTTGAGCAATGGC 990618 Query 14484 TC 14485 || Sbjct 990617 TC 990616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727820102000