Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq23 190 2e-43 >seq23 Length=1356690 Score = 190 bits (210), Expect = 2e-43 Identities = 587/899 (65%), Gaps = 13/899 (1%) Strand=Plus/Minus Query 13383 AACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAA 13442 |||||| || ||||| || ||||| ||||| ||| || ||||||||||| || ||||| Sbjct 991509 AACTCTCTTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAA 991450 Query 13443 TGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAA 13501 ||||||||| ||| | | || || || || || | | | | | || || || ||| Sbjct 991449 TGGATTTGT-GACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGCAC 991391 Query 13502 TAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTA 13561 ||||||| || |||| ||| | ||| | |||||||| | || || |||| Sbjct 991390 AGAACTCAACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAG 991331 Query 13562 TATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGT 13621 | | | || ||| || ||| ||||||||| | || || |||| |||||| Sbjct 991330 CGTCTCTCCAGAAAGTTTTCTCAATATTAACAGCCTCGGTCATGATTCTCTTGATAATGA 991271 Query 13622 CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13681 | ||| || |||| || | || || | | || |||||||| ||| || | Sbjct 991270 CCTTACTTGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGAC 991211 Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| | ||||| ||||| || || || | ||||||||||| |||| || | Sbjct 991210 CCTCATCTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCT 991151 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | ||||| || || | || || ||||| || || || | || |||| |||||||| | Sbjct 991150 TCAACCAGAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAG 991091 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 | | | || || || || | || | | || ||||||| | ||||||| || Sbjct 991090 CAACCAATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAG 991031 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAG 13921 || | |||||| ||||| | ||| |||||||| || | || |||||| Sbjct 991030 CCTTCTCCTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCT 990971 Query 13922 TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAG 13981 | | || || || || || | | | ||| | |||||||| ||||| || | Sbjct 990970 TGTCAGTGATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCA 990911 Query 13982 CTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTT 14041 ||||| |||||||| || ||| || || | | || |||| | ||| | | Sbjct 990910 TAATCTGGAAACCATAGAAGGCTCTTGCCTCAGGTAACTGCACCTGCTTCATAAAGTTCT 990851 Query 14042 CTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAA 14101 |||||| || |||| ||||||||||| ||| ||||| || ||||| | | Sbjct 990850 GTGCCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAGAGA 990791 Query 14102 TAAAGTATTGCTCTTCATTG---TTGAGTTT---TTTCCAATCGGCTAAATCCTTAGAAA 14155 | |||||| ||| |||||| || | || ||||| |||| |||||||| || | Sbjct 990790 TGAAGTAT--CTC-TCATTGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAGA 990734 Query 14156 GATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTT 14215 |||| | || || | ||||| ||| || | || || || |||||| |||||| | Sbjct 990733 GATCGATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATAT 990674 Query 14216 CTTTATATAATATAGGAAAAACTACAAATCTTGAAGATGTT-TCTTTAAGAATTGGCTC 14273 | | || ||||| || | || |||| || |||||| || || || | |||||| Sbjct 990673 CATCGTACTGAATAGGGAACATCACGAATC-TGTGGATGTTCTCCTTGAGCAATGGCTC 990616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588620529200