Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq12 297 3e-75 seq23 188 1e-42 >seq12 Length=1432871 Score = 297 bits (328), Expect = 3e-75 Identities = 757/1136 (67%), Gaps = 22/1136 (2%) Strand=Plus/Plus Query 71776 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATA 71835 |||||||| || || || | |||||||||||| | ||||| |||||||| || | || Sbjct 862808 TTGATGGTACCCAAGTTCTTCTGATTACTCTTTCTATTACAAGCATCCTTGTAGATCATG 862867 Query 71836 AACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTT 71894 || || ||||||||||| |||||| || | |||| | ||| | | || ||||||| Sbjct 862868 AAAGGTGTACCAGTTTCTGTCTGAGCCTCCAAAATCTGGTACCATAACTTCT-GAGCCTT 862926 Query 71895 TATTATA-TTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGT 71953 | | | ||||| | || || || | ||||| | || || ||| |||||||||| Sbjct 862927 CACTGTTCTTCTTCCACGTCCTT-CTTTCTCGTAACGAGTGTACAATTTCTCGAACTCGT 862985 Query 71954 CTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTC-TCCA 72012 | || || ||| | || || ||| ||| | | ||||| ||||| || Sbjct 862986 CACCGTAAACATCTGAGAGACCTGGTGCCTCAGAAGGAGAGAACAATGTCCACTTGTCGT 863045 Query 72013 TCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 72072 | || | || || |||||||| | ||| ||||||||||||||| ||| | ||| | Sbjct 863046 TGCTC-TCCACACGCTTCATAAATAAATCTGGAATCCAAAGAGCTGGAAACAAATCACGT 863104 Query 72073 GTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 72132 | | | |||||| || || ||||||| | | ||||| || | | ||||||| | Sbjct 863105 GCACGAATCTCCTCTTTACCATGATTCTTTCTGATATCGATAAAGTCGAAGATATCAGCA 863164 Query 72133 TGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATG 72192 ||||| || |||||||| || || || | || || | ||||| || || ||||| | Sbjct 863165 TGCCAAGGCTCCAAGTAAATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGATCCACA 863224 Query 72193 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTG 72252 |||||||| || | || | || | | ||| ||||| ||||| ||||||| |||||| Sbjct 863225 TATCTAGCAGTACTGTTGAACACACGAACCATCGGAATTATACCGTTGGATGTACCATTA 863284 Query 72253 GTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAAT-TGATAGACCTATTCCCCC 72311 || |||| ||||| ||| ||| |||||| ||| ||| ||| ||||| || || || Sbjct 863285 GTACCGGCAATATACGAACCAGTGGAACGAATGTTGTGAATGTGA-AGACCAATACCACC 863343 Query 72312 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 72371 || | ||||| || || || || |||| || ||||| ||||| || || ||| || Sbjct 863344 AGCAGTCTTAGAAATCAAAGCACACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTC 863403 Query 72372 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 72431 ||| |||| || || || || ||||| || | || ||| || ||||| || Sbjct 863404 ATCTTTCATTGCAACTAAGAAGCATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAA 863463 Query 72432 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG-TCTCAATAG 72490 || || || || || || || || || | | |||| | | || | | ||| | Sbjct 863464 CAACGTTGGTGATGCATGTGTGAAGTATCTCTTTGACATCAAGTCATATGATTCCAACAC 863523 Query 72491 CTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTC 72550 || | ||||| ||| || || || || || | ||| | | || || |||| Sbjct 863524 CTTA-GGAATATCATCACCATGAATACCGACGGCCACTCTCATAAGAAGGTGTTGTGGTC 863582 Query 72551 TTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 72610 ||||| | | ||| ||| ||| |||||| || || ||||||||| || ||||||| Sbjct 863583 TTTCAGCAACCTTACCATTAATTCTCAACAGATAAGAACGTTCCAAAGTCTTGAAACCAA 863642 Query 72611 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATT 72670 | |||||||| ||||| || |||||| |||| | || || | | |||||||| | Sbjct 863643 AGTAGTTGTAACTGAAGTCACGGTCGTAATTAATGGCTGAGTTCAACTCATCCTTATGCT 863702 Query 72671 TGTTAAC-----TATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTT 72725 |||| |||| | | | | ||||| || ||||| | ||| | || Sbjct 863703 CCATAACAATCTTATAAACCTCATCA-----GAAATCATAGGAGACTTCTTCTGGGTCTT 863757 Query 72726 AGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTT 72785 ||||| |||||| ||| |||||| || || ||| || | || || || | ||| Sbjct 863758 TGGATTGTAGTAGTTGTATAGATCCTCTATAACATCAGAGAAAGGCTTCTTAGTCTGCTT 863817 Query 72786 GTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGT 72845 ||| | |||||| | || | ||| ||||| | | | ||||| |||||||| ||| || Sbjct 863818 GTGCAAATTTGAGATTGCAAGTCTAGCGGCCAAAGTAGCATAGTCTGGATGCATTGTGGT 863877 Query 72846 ACAAGT-GGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 72900 || || ||||| |||| || | || | ||||||| || | || || || ||| Sbjct 863878 -CATGTATGCTGCAGTTTCAGCAGTCAAATTGTCCAACTCAATGGTGGTAACACCA 863932 Score = 105 bits (116), Expect = 9e-18 Identities = 328/499 (66%), Gaps = 9/499 (2%) Strand=Plus/Plus Query 70831 GTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 70890 ||||||| |||||||| ||||| || | || |||| || ||||| ||||| Sbjct 861848 GTACGTAAGTAGTACATACCTGTCTTCAAGCCCTTCTTCCAGCCATAAAAGTGCATGGAA 861907 Query 70891 GTTAGTTTGGA-ATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGAT 70949 || | ||| |||| | | | || | || || ||||| || ||| || ||| Sbjct 861908 GTCAATTTACCCATAGTTGGTGACTGCAAA-TGGATGTTCATAGATTGAGACTGGCAGAT 861966 Query 70950 GAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGT 71009 | | || ||||| || |||||||| |||| | ||| || | ||| ||||||| || Sbjct 861967 GTATGCGCCCCTATCAGCAGCCATAACGATGACAGACTTCTGAGAAATCTCCCAAACTGT 862026 Query 71010 TTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCAT 71065 | || |||| ||| || | || |||| ||||| |||||||| || || | Sbjct 862027 CCTGTACAACTT-CTTGATCTTATCGGGAACGTTTGGCAAGTTCTGAATAGAACCGTTGT 862085 Query 71066 CTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAA 71125 | ||| || || || || | || ||||||| | | || | | | |||| | Sbjct 862086 CGTGAATGATGAAGTTCTTCATTGCATCGTTCCATATTCCCATGTCAATAAGATCTCTCA 862145 Query 71126 GGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTAC 71185 | | ||||||||| | || ||||| |||| | ||||| | || || ||| Sbjct 862146 ACATGTAAGGATTAACGATCTGGAATTCACCAGCAAGAACTCTTCTCTGATAGATGTTAG 862205 Query 71186 TGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCA 71245 ||| | ||||| | | || |||| |||| ||| || | ||| || |||||||||| Sbjct 862206 AGGTGAATGGTTCGAAACATTCGTTATAACCCATAATCTGGGAAGTAGAAGCAGTCGGCA 862265 Query 71246 TAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCG-GATTTTATCTTTTAGAGAT 71304 ||||||||||||| ||| |||||||||||| || | | || ||| | || |||| Sbjct 862266 TAGGTGCCACCAAAAGAGAGTTTCTAAGACCA-GTCTTGGCAATCTTAGCCTTCAGAGTA 862324 Query 71305 TCCCAATTCCAAAGATCCG 71323 ||||| | ||| ||||||| Sbjct 862325 TCCCAGTCCCACAGATCCG 862343 >seq23 Length=1356690 Score = 188 bits (208), Expect = 1e-42 Identities = 571/867 (66%), Gaps = 20/867 (2%) Strand=Plus/Minus Query 41795 TTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 41854 || || || ||||||||||| || |||| || |||||||||||||| || || ||||| Sbjct 991502 TTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAATGGATTT 991443 Query 41855 GTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCT 41914 || || || |||| || | |||||||| | || ||| || || || ||| || Sbjct 991442 GTGACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGCACAGAACTCA 991383 Query 41915 ATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTA 41974 | || |||||| || | ||||| || | | |||||||||||| | | Sbjct 991382 ACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAGCGTCTCTC 991323 Query 41975 -AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTT-CTTCAC 42032 ||||| | || | ||||| || || || || || || |||| | | | | || Sbjct 991322 CAGAAAGTTTTCT-CAATATTAACAGCCTCGGTCATGATTC-TCTTGATAATGACCTTAC 991265 Query 42033 TCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCAT 42092 | ||||||| | || || |||| | ||||| |||||| || |||||||||| Sbjct 991264 TTGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGACCCTCAT 991205 Query 42093 CTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCC 42152 |||| | || | ||||| || ||||| || || ||||| | || | ||| || | || Sbjct 991204 CTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCTTCAACC 991145 Query 42153 AAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAA 42212 | || || || ||||| |||||||| || || | ||||| | || ||||| |||| | Sbjct 991144 AGAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAGCAACCA 991085 Query 42213 GTCTCTCTCCATAACCGGCACTGTCA---TGTATCCACTTTTGAGCCCAATCGGCCTTCT 42269 |||||| |||| ||| ||| | |||||| | |||||| ||||||| Sbjct 991084 ATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAGCCTTCT 991025 Query 42270 TTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTT 42329 || | | || || || | |||||||| || | |||| || || | || Sbjct 991024 CCTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCTTGTCAG 990965 Query 42330 TAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCT 42389 | | ||| || ||||||||||| ||| | || || || ||||| |||| |||| Sbjct 990964 TGATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCATAATCT 990905 Query 42390 GAAATCCGTAGAAACATCTGGCCTC-GGTAACCTGTACTTCTG-TACAAAATCGTTC--A 42445 | || || ||||| ||| ||||| ||||| ||| || ||| | || || |||| Sbjct 990904 GGAAACCATAGAAGGCTCTTGCCTCAGGTAA-CTGCAC--CTGCTTCATAA-AGTTCTGT 990849 Query 42446 GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 42505 || ||||| || | || || || || || ||||| || ||||| ||| | || Sbjct 990848 GCCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAGAGATG 990789 Query 42506 AAATATTTTTCGTCCGGTGTTAAT----TTATTCCAATCATTGATATCTTTAGATATATC 42561 || ||| | || | || || || | |||||| || | | ||| || || | ||| Sbjct 990788 AAGTATCTCTCAT-TGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAGAGATC 990730 Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 | || || | ||||| || || || || ||||| || ||||| | ||| ||||||| Sbjct 990729 GATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATATCATC 990670 Query 42622 ATATTGAATTGGGAAAATAACAAATCT 42648 || ||||| ||||| || || ||||| Sbjct 990669 GTACTGAATAGGGAACATCACGAATCT 990643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138948322800