Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq23 132 4e-26 >seq23 Length=1356690 Score = 132 bits (146), Expect = 4e-26 Identities = 573/890 (64%), Gaps = 21/890 (2%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 || || || ||| |||||| || ||||| || || || || || | || || |||||| Sbjct 991523 TTCTGGTAGTCGGAAACTCTCTTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTT 991464 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTAT---TTTTTACACCCTAATTCTAGT 12976 ||||| || ||||| |||||| | || | ||| || | || || ||| | | Sbjct 991463 TCCATGAAGTCGAATGGATTTGTG--ACGTT-GTAAACCTTCTCGCATCCCAATGCGATA 991407 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 | ||| ||||| ||| ||||| | |||||| ||| | ||| ||||||| || | | Sbjct 991406 AGCAACCTGTCGGCACAGAACTCAACGTACTGAGCCATCATATCGAAGTTCATACCGAGT 991347 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 || || || | ||| ||| | | || |||| || |||| ||| || ||| | | Sbjct 991346 AAAGAAACTGGAAGAGCGTCTCTCCAGAAAGTTTTCTCAATATTAACAGCCTCGGTCATG 991287 Query 13097 ATGTCTCTT-ATTACGTTCTCTAATGGAGGAT--TTGATAGATGCTTAAACATCATACAT 13153 || |||||| || | | || ||| |||| || | || || |||| | ||| Sbjct 991286 AT-TCTCTTGATAATGACCTTACTTGGTGGATGCTTCA-AG-TGAGAGAACAAAAGGCAT 991230 Query 13154 GCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCC 13213 |||||||| || | || |||||||| | || |||||||| || || || || || Sbjct 991229 GCAAAATCGGTATGTAGACCCTCATCTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCT 991170 Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATT 13273 ||||| | |||| || || | ||| || || | |||||||| || || ||||| | Sbjct 991169 GGCATCAAACCTCTCTTCTTCAACCAGAAGATGGAGGCAAACGATCCAGAGAAAAACACA 991110 Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC 13333 ||||||| || ||||| || | ||| || ||| ||||| | || | | | | |||| Sbjct 991109 CCTTCAATGGCAGCAAAAGCAACCAATCTCTCAGCATACAAAGCATCATCATTGTTTATC 991050 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT--ATTGCGTTAA 13391 || | ||||| || || | |||| || | ||| | | || || || | Sbjct 991049 CATCTCAAAGCCCATAAAGCCTTCTCCTTAA--TAGGTGGAATTGTATGGATGGCATTGA 990992 Query 13392 ATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTT 13451 | || || | || || |||| ||||| || || ||||| | | ||| | | Sbjct 990991 ACAAGTAGTCGGACTCTTTCTTGTCAGTGATATAGGTCTCGATCAAAAGGGAATAAGTCT 990932 Query 13452 CTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCT 13511 | || || || || || | | || ||||||||||| || ||| ||||| | || || Sbjct 990931 CAGAGTGGATGTTCTCAACCATAATCTGGAAACCATAGAAGGCTCTTGCCTCAGGTAACT 990872 Query 13512 G-AACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCa 13570 | | || | |||| | | | ||| || || || | || || || || ||| ||| Sbjct 990871 GCACCTGCTTCATAAAGT-TCTGTGCCAAATTCTCATCGACAATACCATCTGAAGCGGCA 990813 Query 13571 aaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTT-TAA--CCAA 13627 || || || | | | || || | | | || || | || ||| | | ||| Sbjct 990812 AAGAAGGCCAAGACACGAGAGATGAAGTATCTCTCATTGGCATTCATCTTGTCATTCCAG 990753 Query 13628 TCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTC 13687 || | ||||| ||||| | ||| | |||||| | ||||| ||||| || | |||||| Sbjct 990752 TCGGTCAAATCCTTTGAGAGATCGATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTC 990693 Query 13688 TTATACATCATCCATATATCCTTATAAACAATGGGAAACACAACGTATCT 13737 || ||||| ||||||||| | || ||| || |||| ||| |||| Sbjct 990692 TTGTACATTTGCCATATATCATCGTACTGAATAGGGAACATCACGAATCT 990643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982242422060