Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05-
08] 30 sequences; 12,880,761 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq23 132 4e-26
>seq23
Length=1356690
Score = 132 bits (146), Expect = 4e-26
Identities = 573/890 (64%), Gaps = 21/890 (2%)
Strand=Plus/Minus
Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919
|| || || ||| |||||| || ||||| || || || || || | || || ||||||
Sbjct 991523 TTCTGGTAGTCGGAAACTCTCTTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTT 991464
Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTAT---TTTTTACACCCTAATTCTAGT 12976
||||| || ||||| |||||| | || | ||| || | || || ||| | |
Sbjct 991463 TCCATGAAGTCGAATGGATTTGTG--ACGTT-GTAAACCTTCTCGCATCCCAATGCGATA 991407
Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036
| ||| ||||| ||| ||||| | |||||| ||| | ||| ||||||| || | |
Sbjct 991406 AGCAACCTGTCGGCACAGAACTCAACGTACTGAGCCATCATATCGAAGTTCATACCGAGT 991347
Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096
|| || || | ||| ||| | | || |||| || |||| ||| || ||| | |
Sbjct 991346 AAAGAAACTGGAAGAGCGTCTCTCCAGAAAGTTTTCTCAATATTAACAGCCTCGGTCATG 991287
Query 13097 ATGTCTCTT-ATTACGTTCTCTAATGGAGGAT--TTGATAGATGCTTAAACATCATACAT 13153
|| |||||| || | | || ||| |||| || | || || |||| | |||
Sbjct 991286 AT-TCTCTTGATAATGACCTTACTTGGTGGATGCTTCA-AG-TGAGAGAACAAAAGGCAT 991230
Query 13154 GCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCC 13213
|||||||| || | || |||||||| | || |||||||| || || || || ||
Sbjct 991229 GCAAAATCGGTATGTAGACCCTCATCTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCT 991170
Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATT 13273
||||| | |||| || || | ||| || || | |||||||| || || ||||| |
Sbjct 991169 GGCATCAAACCTCTCTTCTTCAACCAGAAGATGGAGGCAAACGATCCAGAGAAAAACACA 991110
Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC 13333
||||||| || ||||| || | ||| || ||| ||||| | || | | | | ||||
Sbjct 991109 CCTTCAATGGCAGCAAAAGCAACCAATCTCTCAGCATACAAAGCATCATCATTGTTTATC 991050
Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT--ATTGCGTTAA 13391
|| | ||||| || || | |||| || | ||| | | || || || |
Sbjct 991049 CATCTCAAAGCCCATAAAGCCTTCTCCTTAA--TAGGTGGAATTGTATGGATGGCATTGA 990992
Query 13392 ATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTT 13451
| || || | || || |||| ||||| || || ||||| | | ||| | |
Sbjct 990991 ACAAGTAGTCGGACTCTTTCTTGTCAGTGATATAGGTCTCGATCAAAAGGGAATAAGTCT 990932
Query 13452 CTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCT 13511
| || || || || || | | || ||||||||||| || ||| ||||| | || ||
Sbjct 990931 CAGAGTGGATGTTCTCAACCATAATCTGGAAACCATAGAAGGCTCTTGCCTCAGGTAACT 990872
Query 13512 G-AACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCa 13570
| | || | |||| | | | ||| || || || | || || || || ||| |||
Sbjct 990871 GCACCTGCTTCATAAAGT-TCTGTGCCAAATTCTCATCGACAATACCATCTGAAGCGGCA 990813
Query 13571 aaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTT-TAA--CCAA 13627
|| || || | | | || || | | | || || | || ||| | | |||
Sbjct 990812 AAGAAGGCCAAGACACGAGAGATGAAGTATCTCTCATTGGCATTCATCTTGTCATTCCAG 990753
Query 13628 TCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTC 13687
|| | ||||| ||||| | ||| | |||||| | ||||| ||||| || | ||||||
Sbjct 990752 TCGGTCAAATCCTTTGAGAGATCGATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTC 990693
Query 13688 TTATACATCATCCATATATCCTTATAAACAATGGGAAACACAACGTATCT 13737
|| ||||| ||||||||| | || ||| || |||| ||| ||||
Sbjct 990692 TTGTACATTTGCCATATATCATCGTACTGAATAGGGAACATCACGAATCT 990643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430982242422060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |