Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 154 3e-32 seq23 134 3e-26 seq12 114 3e-20 >seq1 Length=1856900 Score = 154 bits (170), Expect = 3e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| |||||||| || |||||||| | ||||||||| || || | || || ||| Sbjct 768231 GTAGATTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAACTGCTTACCA 768172 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||||||||||| || ||||| || |||||||| |||||| || Sbjct 768171 GCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCCTCCTTATCCTGGATCTTTTGCTTG 768112 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||||| || || ||||| | || ||||||||||| || | || Sbjct 768111 ACATTGTCAATGGTATCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCCGTCAAGGTC 768052 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || || |||||||| Sbjct 768051 TTAACGAAAATTTGCATTTT 768032 >seq23 Length=1356690 Score = 134 bits (148), Expect = 3e-26 Identities = 383/582 (66%), Gaps = 20/582 (3%) Strand=Plus/Plus Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759 ||||| ||||| || || || ||| | | |||||||||| |||||||| |||||| Sbjct 990643 AGATTCGTGATGTTCCCTATTCAGTACGATGATATATGGCAAATGTACAAGAAGGCCGAG 990702 Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAA---- 268815 || ||||| ||||||| || || | ||||| || | || || | || ||||| Sbjct 990703 GCCTCTTTCTGGACTGCCGAGGAGATCGATCTCTCAAAGGATTTGACCGACTGGAATGAC 990762 Query 268816 AAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAG 268875 || | || ||| | || ||| || || ||| | | | || || ||||| | | Sbjct 990763 AAGATGAATGCCA-ATGAGAGATACTTCATCTCTCGTGTCTTGGCCTTCTTTGCCGCTTC 990821 Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAG-AGGTACAGATTCCTG 268934 |||||||| || | || ||| | | | |||| || | | ||| |||| ||| | |||| Sbjct 990822 AGATGGTATTGTCGATGAGAATTTGGCACAGAACTT-TATGAAGCAGGTGCAGTTACCTG 990880 Query 268935 AAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACA 268994 | || ||| || || || |||||||| | || || || || || |||| || Sbjct 990881 AGGCAAGAGCCTTCTATGGTTTCCAGATTATGGTTGAGAACATCCACTCTGAGACTTATT 990940 Query 268995 GTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTA 269054 || || || || || ||||| ||| || || || ||||| || ||| | Sbjct 990941 CCCTTTTGATCGAGACCTATATCACTGACAAGAAAGAGTCC----GACTACTTG-TTCAA 990995 Query 269055 TGAGAACTATGGACTG-----TGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109 || | | || | | | | | | || || ||||||| ||| ||||||||| Sbjct 990996 TGCCATCCATACAATTCCACCTATTAAGGAGAAGGCTTTATGGGCTTTGAGATGGATAAA 991055 Query 269110 CGATAGCGCGCCTT---ACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATT 269166 | || | ||| | | || || || ||||||||||| || | |||||| | || Sbjct 991056 CAATGATGATGCTTTGTATGCTGAGAGATTGGTTGCTTTTGCTGCCATTGAAGGTGTGTT 991115 Query 269167 CTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATT 269226 || || || || |||||| | ||||| ||||||||||| ||||| | |||||||| | Sbjct 991116 TTTCTCTGGATCGTTTGCCTCCATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCAGGCCT 991175 Query 269227 AACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 || ||||||||||| | || |||| || || ||| |||| Sbjct 991176 TACGTTCTCTAACGAGCTTATCTGCAGAGATGAGGGTCTACA 991217 >seq12 Length=1432871 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| || | |||||| || || || | || || ||| Sbjct 1192753 GTAGACTCCTTCTGGATGTTGTAGTCCGACAAAGTTCTGCCATCCTCCAACTGCTTACCA 1192812 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | ||||| ||||| || || ||||| || || || || |||||| || Sbjct 1192813 GCAAAGATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTTTGCTTG 1192872 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| || || ||||| | || ||||||||||| || | || Sbjct 1192873 ACATTGTCAATGGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTCAAAGTC 1192932 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || || ||||||||| Sbjct 1192933 TTAACGAAAATTTGCATTTTG 1192953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397957431240