Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1 172 7e-38 >seq1 Length=1856900 Score = 172 bits (190), Expect = 7e-38 Identities = 394/587 (67%), Gaps = 22/587 (4%) Strand=Plus/Plus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 || |||||||| ||||| | ||||| | || ||||| | || |||||| || Sbjct 590412 AAGTTTGAAGATATGGGTATCGGTGGTTTGGACAATGAATTCACCTCCATCTTCAGAAGA 590471 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAACATATA 164517 |||||||| || ||| ||||| | || || | || || || | |||| | Sbjct 590472 GCATTTGCCTCAAGAATCTTTCCTCCAGCGTTAGTAGAGAAGTTGGGAATTCAACACGTC 590531 Query 164518 AAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATT 164577 ||||| || | ||| |||||||||| ||| || || || ||||| ||| || ||| Sbjct 590532 AAAGGTATGCTCTTATATGGACCTCCAGGTACAGGAAAGACTTTAATTGCTAGACAAATT 590591 Query 164578 GCTCAAGCTTTTAAATCGC----GACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAA 164633 | | || | |||||| || || || |||||||| |||||||||||| | ||| Sbjct 590592 GGTAAAA-TGTTAAAT-GCTAAGGAGCCA--AAAATTGTCAATGGTCCTGAAATCTTGTC 590647 Query 164634 CAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGA 164693 ||||||||| ||| || |||| || ||||||| |||||| | || || || | ||| Sbjct 590648 CAAATATGTTGGTTCTTCGGAAGAGAACATTAGAAATTTGTTTAAAGATGCAGAGGCAGA 590707 Query 164694 ACAAAAGAAAGCAGGTTTAGC-TAGTAAATTACATGTTATTGTTTTTGATGAGATAGATG 164752 | | ||| | ||| || | || || ||| ||||| | ||||| ||| | ||| Sbjct 590708 ATACAAGCAGAAAGGGGATGCGTCGTCCCTT-CATATTATTATATTTGACGAGTTGGATT 590766 Query 164753 CTCTTTGCAAAAAACGTGGT------GATAATATTATTCATGATGC------AGTGGTTA 164800 || | | ||| |||||||| | | || || | || ||| ||||| | Sbjct 590767 CTATATTCAAGCAACGTGGTTCGAGAGGTGATGGTACTGGTGTTGCCGACAATGTGGTGA 590826 Query 164801 ATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTA 164860 |||| |||||| |||| || |||||||| || |||| |||||| || | | || | Sbjct 590827 ATCAATTGCTTGCTAAGATGGATGGTGTTGATCAGCTAAACAATATTCTAGTCATTGGAA 590886 Query 164861 TGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATTGA 164920 |||| || || |||||||||||||| || ||| | || ||||| |||| ||| || Sbjct 590887 TGACTAATAGAAGGGATTTAATTGATGAAGCATTACTTCGTCCTGGAAGATTTGAAGTGC 590946 Query 164921 AAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTA 164967 | | ||||| ||||| || | |||||||| | ||||||||| Sbjct 590947 AGGTTGAAATTCATTTACCTGATGAGGAAGGACGACACCAAATTTTA 590993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871776548000