Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq12 338 8e-88 seq23 185 1e-41 >seq12 Length=1432871 Score = 338 bits (374), Expect = 8e-88 Identities = 1373/2135 (64%), Gaps = 55/2135 (3%) Strand=Plus/Plus Query 61995 GTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTT 62051 |||||||| |||| |||||| || || ||||||| |||||||| || || || Sbjct 861818 GTGAATTGGATGGCACGAGCGGCAGCCTGT---GTACGTAAGTAGTACATACCTGTCTTC 861874 Query 62052 AGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGC 62110 | || |||| || ||||| ||||| || | ||| ||| | | |||| Sbjct 861875 AAGCCCTTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTACCCATAGTTGGTGACTGC 861934 Query 62111 TATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTT 62170 | |||||| |||||||||||| || |||| | || ||||| || |||||||| Sbjct 861935 AA-ATGGATGTTCATAGATTGAGACTGGCAGATGTATGCGCCCCTATCAGCAGCCATAAC 861993 Query 62171 TATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTG 62229 |||| | ||| || | ||| ||||||| || | || |||| ||| || | || | Sbjct 861994 GATGACAGACTTCTGAGAAATCTCCCAAACTGTCCTGTACAACTT-CTTGATCTTATCGG 862052 Query 62230 GAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCAT 62286 ||| ||||| |||||||| || || || || || ||||| || ||| Sbjct 862053 GAACGTTTGGCAAGTTCTGAATAGAACCGTTGTCGTGAATGATGAAGTTCTTCATTGCAT 862112 Query 62287 CATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATT 62346 | ||||||| | | || | | | |||| | | | |||||||| | || |||| Sbjct 862113 CGTTCCATATTCCCATGTCAATAAGATCTCTCAACATGTAAGGATTAACGATCTGGAATT 862172 Query 62347 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTAT 62406 | |||| | ||||| | || || ||| ||| | ||||| | | || |||| Sbjct 862173 CACCAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGTTCGAAACATTCGTTAT 862232 Query 62407 TTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62466 |||| ||| || | ||| || ||||||||||||||||||||||| | | ||||||| Sbjct 862233 AACCCATAATCTGGGAAGTAGAAGCAGTCGGCATAGGTGCCACCAAAAGAGAGTTTCTAA 862292 Query 62467 GACC-GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACA 62525 |||| || | | || ||| | || |||| ||||| | ||| ||||||| || Sbjct 862293 GACCAGTCTTGGCA-ATCTTAGCCTTCAGAGTATCCCAGTCCCACAGATCCGTAGGCTTT 862351 Query 62526 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 62585 |||||||||||| || || || ||| ||||||| | Sbjct 862352 TTGTTCCACATATCATATTGTAGAATACCCTTTGAAGCTGGAGAGCCTTCATATGTCTGA 862411 Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62645 || | || || | | |||| || | |||| |||||| ||| ||| | ||| Sbjct 862412 TAAGTACCCTCTTCCACAGCAAGCTGGTTGGATTCCTCCAATGCAGCGTGATACAAGGTC 862471 Query 62646 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAG-AG 62704 || || |||| | || || || |||| || | | ||||| || || | |||| | Sbjct 862472 TCAAATATCTGAATGTTAAGCTCCCGTGCATCTGGACAGTCAAAAGG-TAGTCTAAGCAT 862530 Query 62705 AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62764 | || | || || | || || | ||||| | | |||||||| | |||| | || || Sbjct 862531 GAAGAAGGTATCAGCAAGACCCTGGATACCAAGAGCAATAGGTCTGTTTCTCATGTTGGA 862590 Query 62765 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG-- 62822 | | || || |||| ||||| ||||| | || |||| || | || | | Sbjct 862591 GTTACGGGCCTCAGGAACTGGATAGTAATTTCTGTCAATAACACGGTTTAAGTTACGGGT 862650 Query 62823 -ACAA--TTACT----TTGACCACATCCTTCAGTTTGAGAAAATCAA--ATCGCCCATCT 62873 |||| ||| | ||| || | || | |||| | | ||| ||| | ||||| Sbjct 862651 AACAACTTTAGTAATCTTGTGCAACTTCTCGAAGTTGA-ACCAGCAATGATC-CTCATCT 862708 Query 62874 ATTACAAACATGTTCAAGGCAACAGATG----CCAGATTACAAACGGCTACCTCATTAGC 62929 ||| | | || | |||| ||| ||| ||||| || | ||||||| | Sbjct 862709 GACTCAACAAAGG-CAGGCAAACAAATGTTGGCCAAGTTACACACACCAACCTCATCTGG 862767 Query 62930 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTG 62989 | | || | | | |||| ||| | || | | ||||| || || || || | Sbjct 862768 AGAGGAGTACTCGACAACCTCACAGCACAAGTTCGAAGATTTGATGGTACCCAAGTTCTT 862827 Query 62990 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 63049 |||||||||||| | ||||| |||||||| || | ||||| || ||||||||||| | Sbjct 862828 CTGATTACTCTTTCTATTACAAGCATCCTTGTAGATCATGAAAGGTGTACCAGTTTCTGT 862887 Query 63050 CTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGAT-TTGTATCTC 63107 ||||| || | |||| | ||| | | || ||||||| | | | | || | || Sbjct 862888 CTGAGCCTCCAAAATCTGGTACCATAACTTCT-GAGCCTTCACTGTTCTTCTTCCACGTC 862946 Query 63108 CTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 63167 ||| || | ||||| | || |||||| ||||||||||| || |||||| | Sbjct 862947 CTT-CTTTCTCGTAACGAGTGTACAATTTCTCGAACTCGTCACCGTAAACATCTGAGAGA 863005 Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 || || ||| ||| | | ||| | ||||| ||| || ||| || |||||| Sbjct 863006 CCTGGTGCCTCAGAAGGAGAGAACAATGTCCACTTGTCGTTGCTCTCCACACGCTTCATA 863065 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 || | ||| ||||||||||||||| ||| | ||| | | | | ||||| || || Sbjct 863066 AATAAATCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCACGAATCTCCTCTTTACCA 863125 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||||| | | ||||| || | | ||||||| |||||| || |||||||| || Sbjct 863126 TGATTCTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGCTCCAAGTAAATA 863185 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || || | || || | ||||| || || ||||| | |||||||| || | || | Sbjct 863186 GCAATGGCACCTGGTCTCTTGTTACCACCTTGATCCACATATCTAGCAGTACTGTTGAAC 863245 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || | | ||| ||||| |||||||| ||| ||||||| ||||||| ||||| ||| Sbjct 863246 ACACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCAATATACGAACCA 863305 Query 63468 CTGGCACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63526 ||| |||||| || ||| ||| ||||| || || || || | ||||| || || || Sbjct 863306 GTGGAACGAATGTTGTGAATGTGA-AGACCAATACCACCAGCAGTCTTAGAAATCAAAGC 863364 Query 63527 GCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAA 63586 || |||| || || || |||||||| || || ||||| |||| || || || Sbjct 863365 ACACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCATTGCAACTAAGAA 863424 Query 63587 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63646 || ||||| || | || ||| || ||||| || || || || || || || || Sbjct 863425 GCATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGGTGATGCATGTGT 863484 Query 63647 AAACCATTTTTCAGAAAGTAGATTGTACG-TCTCAATAGCTGAGTCTATATCCCATTGAT 63705 || || | | || | | | || | | ||| | || || ||||| || Sbjct 863485 GAAGTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTAG-GAATATCATCACCAT 863543 Query 63706 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63765 |||| || || || || | ||| | | ||| || ||||||||| | | ||| || | Sbjct 863544 GAATACCGACGGCCACTCTCATAAGAAGGTGTTGTGGTCTTTCAGCAACCTTACCATTAA 863603 Query 63766 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63825 || |||||| || || ||||||||| || |||||||| |||||||| ||||| | Sbjct 863604 TTCTCAACAGATAAGAACGTTCCAAAGTCTTGAAACCAAAGTAGTTGTAACTGAAGTCAC 863663 Query 63826 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAAC-----TATATCCAT 63880 | |||||| |||| | ||||| | | |||||||| | |||| |||| | | Sbjct 863664 GGTCGTAATTAATGGCTGAGTTCAACTCATCCTTATGCTCCATAACAATCTTATAAACCT 863723 Query 63881 GGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAA 63940 | | ||||| || ||||| | ||| | || ||||| |||||| ||| Sbjct 863724 CATCA-----GAAATCATAGGAGACTTCTTCTGGGTCTTTGGATTGTAGTAGTTGTATAG 863778 Query 63941 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTAT 64000 |||||| || || ||| || | || || || | |||||| | |||||| | || | Sbjct 863779 ATCCTCTATAACATCAGAGAAAGGCTTCTTAGTCTGCTTGTGCAAATTTGAGATTGCAAG 863838 Query 64001 TCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGG 64059 ||| ||||| | | | ||||| || ||||| ||| || || || ||||| |||| | Sbjct 863839 TCTAGCGGCCAAAGTAGCATAGTCTGGATGCATTGTGGT-CATGTATGCTGCAGTTTCAG 863897 Query 64060 CTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 64094 | | || | ||||||| || | || || || ||| Sbjct 863898 CAGTCAAATTGTCCAACTCAATGGTGGTAACACCA 863932 >seq23 Length=1356690 Score = 185 bits (204), Expect = 1e-41 Identities = 568/866 (66%), Gaps = 18/866 (2%) Strand=Plus/Minus Query 33034 TTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 33093 || || || |||||||| || || |||| || |||||||||||||| || || ||||| Sbjct 991502 TTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAATGGATTT 991443 Query 33094 GTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCT 33153 || || || |||| || | |||||||| | || ||| || || || ||| || Sbjct 991442 GTGACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGCACAGAACTCA 991383 Query 33154 ATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTA 33213 | || |||||| || | ||||| || | | |||||||||||| | | Sbjct 991382 ACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAGCGTCTCTC 991323 Query 33214 -AGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACT 33272 ||||| | || | |||| || || || || || || | | | | | ||| Sbjct 991322 CAGAAAGTTTTCT-CAATATTAACAGCCTCGGTCATGATTCTCTTGATAATGACCTTACT 991264 Query 33273 CGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTC 33332 ||||||||| || || |||| | ||||| |||||| || |||||||| || Sbjct 991263 TGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGACCCTCATC 991204 Query 33333 TCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCA 33392 ||| | || || ||||| || ||||| || || ||||| | || | ||| || | ||| Sbjct 991203 TCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCTTCAACCA 991144 Query 33393 AAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33452 || ||||| || || |||||||| || || | ||||| | |||||||| |||| | Sbjct 991143 GAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAGCAACCAA 991084 Query 33453 TCTCTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 |||||| |||| || |||| |||||| | |||||| ||||||| Sbjct 991083 TCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAGCCTTCTC 991024 Query 33510 TTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTT 33569 || | | || || || | |||||||| || | |||| || || | || | Sbjct 991023 CTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCTTGTCAGT 990964 Query 33570 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 33629 | ||| || ||||||||||| ||| | || || || ||||| |||| ||||| Sbjct 990963 GATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCATAATCTG 990904 Query 33630 AAATCCGTAGAAACATCTAGCCTC-GGTAATCTGTACTTCTG-TACAAAATCGTTC--CG 33685 || || ||||| ||| ||||| ||||| ||| || ||| | || || |||| | Sbjct 990903 GAAACCATAGAAGGCTCTTGCCTCAGGTAA-CTGCAC--CTGCTTCATAA-AGTTCTGTG 990848 Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 ||||||| |||| || || || || || ||||| || ||||| ||| | || | Sbjct 990847 CCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAGAGATGA 990788 Query 33746 AATATTTTTCGTCTGGTGTTAGT----TTATTCCAATCATTGATATCTTTAGATATATCT 33801 | ||| | || | ||| || | | |||||| || | | ||| || || | ||| Sbjct 990787 AGTATCTCTCAT-TGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAGAGATCG 990729 Query 33802 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAA 33861 | || || | ||||| || || ||||| ||||| || ||||| | ||| || |||| Sbjct 990728 ATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATATCATCG 990669 Query 33862 TATTGGATTGGGAAAATAACAAATCT 33887 || || || ||||| || || ||||| Sbjct 990668 TACTGAATAGGGAACATCACGAATCT 990643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946966394800