Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq12 149 2e-30 seq26 100 7e-16 seq23 93.3 1e-13 >seq12 Length=1432871 Score = 149 bits (164), Expect = 2e-30 Identities = 300/440 (68%), Gaps = 4/440 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || || | ||||| ||| ||||||||| |||| || |||||||| || Sbjct 863487 TTCACACATGCATCACCAACGTTGTTCAATGCTGGTACTCCACGCCCTCAGATGTCATCA 863428 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | | |||||| || || || || || ||||||| || || | || | Sbjct 863427 TGCTTCTTAGTTGCAATGAAAGATGACTCTATTGAAGGTATCTACGATACTTTGAAACAG 863368 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 |||||| | ||||| |||| ||| || || |||||| | || ||||| ||||| | Sbjct 863367 TGTGCTTTGATTTCTAAGACTGCTGGTGGTATTGGTCTTCACATTCACAACATTCGTTCC 863308 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTC 363784 || | || | ||| ||| || || ||| || || || | |||| ||| ||| Sbjct 863307 ACTGGTTCGT-ATATTGCCGGTACTAATGG-TACATCCAACGGTATAATTCCGATGGTTC 863250 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 ||||||| ||| |||||| || || || || || ||||| ||| | ||| || Sbjct 863249 GTGTGTTCAACAGTACTGCTAGATATGTGGATCAAGGTGGTAACAAGAGACCAGGTGCCA 863190 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 ||||||| || | |||||| ||||| ||||| || || ||| | || || | || | Sbjct 863189 TTGCTATTTACTTGGAGCCTTGGCATGCTGATATCTTCGACTTTATCGATATCAGAAAGA 863130 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 | || |||||||| | |||||||||||| |||| || |||||| || | || Sbjct 863129 ATCATGGTAAAGAGGAGATTCGTGCACGTGATTTGTTTCCAGCTCTTTGGATTCCAGATT 863070 Query 363965 ATTTTATGAAGCGCGTGGAG 363984 ||||||||||| |||||| Sbjct 863069 TATTTATGAAGCGTGTGGAG 863050 >seq26 Length=1546578 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831 ||||||||||| | |||||| ||| || || | |||||| |||||||||||| ||| Sbjct 306745 GTTCCCATGCTCAGGGTGTTTAACAGCACAGCAAAGTACGTTGACCAGGGTGGAAACAAG 306804 Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891 || || || | | |||||| ||||| ||||| |||||| | || || || Sbjct 306805 CGTCCTGGTGCAATATGTGCGTATCTTGAGCCCTGGCATGCGGATATTCTGGAATTCCTC 306864 Query 363892 GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTT 363951 || ||| ||| ||| || || |||||| |||| ||| | ||||| || ||||| | Sbjct 306865 GACCTCAAGAAGAACCACGGCAAGGAGGAAATGCGGGCAAGGGATCTCTTTTATGCGTTG 306924 Query 363952 TGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 ||| || | |||| || |||| ||| ||| || Sbjct 306925 TGGATTCCGGACCTGTTCATGAGGCGTGTGAAG 306957 Score = 95.1 bits (104), Expect = 3e-14 Identities = 197/291 (68%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 364756 ATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACA 364815 ||||| ||||||||||| | |||||| | ||| || ||| ||||||||||| | ||| Sbjct 307753 ATGCCGACGGCTTCTACATCGCAGATCTTGGGATTCACCGAATGCTTCGAACCAATCACA 307812 Query 364816 AGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTA 364875 |||| | || | | | || |||||||| || | ||| || || |||||| Sbjct 307813 TCCAATATCTACACCAGGAGAGTCCTTTCCGGTGAGCACCAGGTGGTAAACTCGTACCTC 307872 Query 364876 GTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCC 364935 || | |||||| | | ||||| ||| | | |||||| || | || || ||| Sbjct 307873 ATCGACGATCTTGACAAGTTGGGGCTCTGGAACTCCGGAATGAAGGACCAGATTATTGCC 307932 Query 364936 GCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAA 364995 || ||||| || | ||| | ||| |||| | || ||| | | |||| |||||||| Sbjct 307933 GCCAATGGATCCATCCAGGATATTGCAGGCATCCCGGAAAACATCAAGCAGCTTTACAAA 307992 Query 364996 ACCGTATGGGAAATTTC-CATGCGAACTCTCATTGATATGGCGGCCGATCG 365045 || || ||||| || || || || | |||| |||||||| || || || Sbjct 307993 ACAGTCTGGGACATGTCTCAAAAGATC-ATCATCGATATGGCAGCGGACCG 308042 >seq23 Length=1356690 Score = 93.3 bits (102), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 22420 ACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGT 22479 || |||| | | |||||| | ||||| ||||| ||| |||||| |||||||| | Sbjct 991006 ACAATTCCACCTATTAAGGAGAAGGCTTTATGGGCTTTGAGATGGATAAACAATGATGAT 991065 Query 22480 TCATTC---GCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGA 22536 | || || || | | |||| ||||||| ||||||| | || || |||||| Sbjct 991066 GCTTTGTATGCTGAGAGATTGGTTGCTTTTGCTGCCATTGAAGGTGTGTTTTTCTCTGGA 991125 Query 22537 GCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA 22596 | ||| | ||||| ||| | || || | | | ||||| || || ||||| || Sbjct 991126 TCGTTTGCCTCCATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCAGGCCTTACGTTCTCT 991185 Query 22597 AATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 || ||| | || || ||||||||||||| |||||||||||||| || Sbjct 991186 AACGAGCTTATCTGCAGAGATGAGGGTCTACATACCGATTTTGCATG 991232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353099023460