Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq25 122 6e-23 seq1 118 7e-22 seq12 105 4e-18 >seq25 Length=1112461 Score = 122 bits (134), Expect = 6e-23 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || || ||||| | | |||||||||||||| ||| |||||||||||||||| Sbjct 695911 CATT-CCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAAT 695969 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | | |||| || ||||| || ||||||||||| | | || || || | Sbjct 695970 CAGAAAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTG 696029 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||| || || ||| |||||||| ||||| | || ||| || | || Sbjct 696030 GTGGAATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATT 696089 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| |||| || || || || |||||||| ||||| || || || ||||| Sbjct 696090 CAACCTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCAT 696141 Score = 122 bits (134), Expect = 6e-23 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || || ||||| | | |||||||||||||| ||| |||||||||||||||| Sbjct 696139 CATT-CCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAAT 696197 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | | |||| || ||||| || ||||||||||| | | || || || | Sbjct 696198 CAGAAAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTG 696257 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||| || || ||| |||||||| ||||| | || ||| || | || Sbjct 696258 GTGGAATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATT 696317 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| |||| || || || || |||||||| ||||| || || || ||||| Sbjct 696318 CAACCTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCAT 696369 Score = 120 bits (132), Expect = 2e-22 Identities = 167/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || || ||||| | | |||||||||||||| ||| |||||||||||||||| Sbjct 696367 CATT-CCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAAT 696425 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | | |||| || ||||| || ||||||||||| | | || || || | Sbjct 696426 CAGAAAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTG 696485 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||| || || ||| |||||||| ||||| | || ||| || | || Sbjct 696486 GTGGAATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATT 696545 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| ||||| || || || || || || || || ||||| || || |||||| Sbjct 696546 CAACCTCTAACGTGATTGTCTTTCCAGTTAATGTCTTCACAAAAATTTGCATG 696598 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| || | | ||||| |||||||| ||| |||||||||||||||||||| Sbjct 695687 CCTCCTCTTAACCTAAGAACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAA 695746 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | |||| || ||||| || ||||||||||| | | || || || | || Sbjct 695747 AGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGA 695806 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| || || ||| |||||||| ||||| | || ||| || | |||||| Sbjct 695807 ATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACC 695866 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || |||||||| ||||| || || || ||||| Sbjct 695867 TCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCAT 695913 >seq1 Length=1856900 Score = 118 bits (130), Expect = 7e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||||||| | ||| ||||| |||||||| ||||| ||||| ||||| |||| Sbjct 768263 TACCTCCTCTCAATCTCAAGACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAG 768204 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| | | || || || || || || ||||| || | | |||||||| | | Sbjct 768203 ACAAAGTTCTACCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTG 768144 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || || ||| || |||||||| ||||| | | ||||| | || | Sbjct 768143 GAATTCCCTCCTTATCCTGGATCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCA 768084 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | || || || ||||| |||||||||||||| || ||||| || ||||| ||| Sbjct 768083 CCTCCAAGGTGATAGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTTT 768031 >seq12 Length=1432871 Score = 105 bits (116), Expect = 4e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 |||||||||||||| | ||| ||||| |||||||| |||||| || || ||||| || Sbjct 1192720 TTACCACCTCTCAATCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCC 1192779 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 |||||| | | || || || || || || ||||| || | | || ||||| | Sbjct 1192780 GACAAAGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGT 1192839 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| || || ||||| || |||||||| ||||| | | || || | || Sbjct 1192840 GGGATTCCCTCCTTGTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCC 1192899 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || || ||||| ||||| ||||| || || ||||| || ||||| || Sbjct 1192900 ACCTCCAAGGTGATAGTCTTACCGGTCAAAGTCTTAACGAAAATTTGCATTTT 1192952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947077534930