Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05-
08] 30 sequences; 12,880,761 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq25 122 6e-23
seq1 118 7e-22
seq12 105 4e-18
>seq25
Length=1112461
Score = 122 bits (134), Expect = 6e-23
Identities = 167/232 (72%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| || || ||||| | | |||||||||||||| ||| ||||||||||||||||
Sbjct 695911 CATT-CCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAAT 695969
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
|||| | | | |||| || ||||| || ||||||||||| | | || || || |
Sbjct 695970 CAGAAAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTG 696029
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
|| | ||||| || || ||| |||||||| ||||| | || ||| || | ||
Sbjct 696030 GTGGAATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATT 696089
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| |||| || || || || |||||||| ||||| || || || |||||
Sbjct 696090 CAACCTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCAT 696141
Score = 122 bits (134), Expect = 6e-23
Identities = 167/232 (72%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| || || ||||| | | |||||||||||||| ||| ||||||||||||||||
Sbjct 696139 CATT-CCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAAT 696197
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
|||| | | | |||| || ||||| || ||||||||||| | | || || || |
Sbjct 696198 CAGAAAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTG 696257
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
|| | ||||| || || ||| |||||||| ||||| | || ||| || | ||
Sbjct 696258 GTGGAATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATT 696317
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| |||| || || || || |||||||| ||||| || || || |||||
Sbjct 696318 CAACCTCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCAT 696369
Score = 120 bits (132), Expect = 2e-22
Identities = 167/233 (72%), Gaps = 1/233 (0%)
Strand=Plus/Plus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| || || ||||| | | |||||||||||||| ||| ||||||||||||||||
Sbjct 696367 CATT-CCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAAT 696425
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
|||| | | | |||| || ||||| || ||||||||||| | | || || || |
Sbjct 696426 CAGAAAGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTG 696485
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
|| | ||||| || || ||| |||||||| ||||| | || ||| || | ||
Sbjct 696486 GTGGAATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATT 696545
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|||| ||||| || || || || || || || || ||||| || || ||||||
Sbjct 696546 CAACCTCTAACGTGATTGTCTTTCCAGTTAATGTCTTCACAAAAATTTGCATG 696598
Score = 116 bits (128), Expect = 2e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|| ||||| || | | ||||| |||||||| ||| ||||||||||||||||||||
Sbjct 695687 CCTCCTCTTAACCTAAGAACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAA 695746
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | | |||| || ||||| || ||||||||||| | | || || || | ||
Sbjct 695747 AGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGA 695806
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||| || || ||| |||||||| ||||| | || ||| || | ||||||
Sbjct 695807 ATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACC 695866
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| || || || || |||||||| ||||| || || || |||||
Sbjct 695867 TCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCAT 695913
>seq1
Length=1856900
Score = 118 bits (130), Expect = 7e-22
Identities = 166/233 (71%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||| |||||||| | ||| ||||| |||||||| ||||| ||||| ||||| ||||
Sbjct 768263 TACCTCCTCTCAATCTCAAGACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAG 768204
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||||| | | || || || || || || ||||| || | | |||||||| | |
Sbjct 768203 ACAAAGTTCTACCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTG 768144
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | || || || ||| || |||||||| ||||| | | ||||| | || |
Sbjct 768143 GAATTCCCTCCTTATCCTGGATCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCA 768084
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321
| || || || ||||| |||||||||||||| || ||||| || ||||| |||
Sbjct 768083 CCTCCAAGGTGATAGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTTT 768031
>seq12
Length=1432871
Score = 105 bits (116), Expect = 4e-18
Identities = 163/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147
|||||||||||||| | ||| ||||| |||||||| |||||| || || ||||| ||
Sbjct 1192720 TTACCACCTCTCAATCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCC 1192779
Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207
|||||| | | || || || || || || ||||| || | | || ||||| |
Sbjct 1192780 GACAAAGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGT 1192839
Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267
|||| || || ||||| || |||||||| ||||| | | || || | ||
Sbjct 1192840 GGGATTCCCTCCTTGTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCC 1192899
Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| || || || ||||| ||||| ||||| || || ||||| || ||||| ||
Sbjct 1192900 ACCTCCAAGGTGATAGTCTTACCGGTCAAAGTCTTAACGAAAATTTGCATTTT 1192952
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334947077534930
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |