Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq12 347 2e-90 seq23 192 7e-44 >seq12 Length=1432871 Score = 347 bits (384), Expect = 2e-90 Identities = 1380/2136 (65%), Gaps = 57/2136 (3%) Strand=Plus/Plus Query 61850 GTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTT 61906 |||||||| |||| |||||| || || ||||||| |||||||| || || || Sbjct 861818 GTGAATTGGATGGCACGAGCGGCAGCCTGT---GTACGTAAGTAGTACATACCTGTCTTC 861874 Query 61907 AGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGC 61965 | || |||| || ||||| ||||| || | ||| ||| | | |||| Sbjct 861875 AAGCCCTTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTACCCATAGTTGGTGACTGC 861934 Query 61966 TATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTT 62025 | |||||| |||||||||||| || |||| | || ||||| || |||||||| Sbjct 861935 AA-ATGGATGTTCATAGATTGAGACTGGCAGATGTATGCGCCCCTATCAGCAGCCATAAC 861993 Query 62026 TATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTG 62084 || | | ||| || | ||| ||||||| || | || |||| ||| || | || | Sbjct 861994 GATGACAGACTTCTGAGAAATCTCCCAAACTGTCCTGTACAACTT-CTTGATCTTATCGG 862052 Query 62085 GAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCAT 62141 ||| ||||| |||||||| || || || || || ||||| || ||| Sbjct 862053 GAACGTTTGGCAAGTTCTGAATAGAACCGTTGTCGTGAATGATGAAGTTCTTCATTGCAT 862112 Query 62142 CATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATT 62201 | ||||||| | | || | | | |||| | | | |||||||| | || |||| Sbjct 862113 CGTTCCATATTCCCATGTCAATAAGATCTCTCAACATGTAAGGATTAACGATCTGGAATT 862172 Query 62202 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTAT 62261 | |||| | ||||| | || || ||| ||| | ||||| | | | || |||| Sbjct 862173 CACCAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGTTCGAAACATTCGTTAT 862232 Query 62262 TTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62321 |||| ||| || | ||| || ||||||||||||||||||||||| | | ||||||| Sbjct 862233 AACCCATAATCTGGGAAGTAGAAGCAGTCGGCATAGGTGCCACCAAAAGAGAGTTTCTAA 862292 Query 62322 GACC-GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACA 62380 |||| || | | || ||| | || |||| ||||| | ||| ||||||| || Sbjct 862293 GACCAGTCTTGGCA-ATCTTAGCCTTCAGAGTATCCCAGTCCCACAGATCCGTAGGCTTT 862351 Query 62381 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 62440 |||||||||||| || || || ||| ||||||| | Sbjct 862352 TTGTTCCACATATCATATTGTAGAATACCCTTTGAAGCTGGAGAGCCTTCATATGTCTGA 862411 Query 62441 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62500 || | || || | | |||| || | |||| |||||| ||| ||| | ||| Sbjct 862412 TAAGTACCCTCTTCCACAGCAAGCTGGTTGGATTCCTCCAATGCAGCGTGATACAAGGTC 862471 Query 62501 TCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAG-AG 62559 || || |||| | || || || | || || | | ||||| || || | |||| | Sbjct 862472 TCAAATATCTGAATGTTAAGCTCCCGTGCATCTGGACAGTCAAAAGG-TAGTCTAAGCAT 862530 Query 62560 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62619 | || | || || | || || | ||||| | | |||||||| | |||| | || || Sbjct 862531 GAAGAAGGTATCAGCAAGACCCTGGATACCAAGAGCAATAGGTCTGTTTCTCATGTTGGA 862590 Query 62620 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG-- 62677 | | || || |||| ||||| ||||| | || |||| || | || | | Sbjct 862591 GTTACGGGCCTCAGGAACTGGATAGTAATTTCTGTCAATAACACGGTTTAAGTTACGGGT 862650 Query 62678 -ACAA--TTACT----TTGACCACATCCTTCAGTTTGAGAAAATCAA--ATCGCCCATCT 62728 |||| ||| | ||| || | || | |||| | | ||| ||| | ||||| Sbjct 862651 AACAACTTTAGTAATCTTGTGCAACTTCTCGAAGTTGA-ACCAGCAATGATC-CTCATCT 862708 Query 62729 -ATT--ACAAA--CATGTTCAATGCAACAGATG-CCAGATTACAAACGGCTACCTCATTA 62782 | | ||||| || | ||| ||| | || ||| ||||| || | ||||||| Sbjct 862709 GACTCAACAAAGGCAGG--CAAA-CAAATGTTGGCCAAGTTACACACACCAACCTCATCT 862765 Query 62783 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 62842 | | | || | | | |||| ||| | || | | |||||||| || || || Sbjct 862766 GGAGAGGAGTACTCGACAACCTCACAGCACAAGTTCGAAGATTTGATGGTACCCAAGTTC 862825 Query 62843 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 62902 | |||||||||||| | ||||| |||||||| || | ||||| || ||||||||||| Sbjct 862826 TTCTGATTACTCTTTCTATTACAAGCATCCTTGTAGATCATGAAAGGTGTACCAGTTTCT 862885 Query 62903 ATCTGAGATTCTATAATCGCTTTCCA-GACGACTCGAGCCTTTATTATAGAT-TTGTATC 62960 |||||| || | |||| | ||| || || ||||||| | | | | || | Sbjct 862886 GTCTGAGCCTCCAAAATCTGGTACCATAACTTCT-GAGCCTTCACTGTTCTTCTTCCACG 862944 Query 62961 TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63020 || |||| | ||||| | || |||||| ||||||||||| || |||||| | Sbjct 862945 TC-CTTCTTTCTCGTAACGAGTGTACAATTTCTCGAACTCGTCACCGTAAACATCTGAGA 863003 Query 63021 GTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63080 | || || ||| ||| | | ||| | ||||| ||| || ||| || |||| Sbjct 863004 GACCTGGTGCCTCAGAAGGAGAGAACAATGTCCACTTGTCGTTGCTCTCCACACGCTTCA 863063 Query 63081 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTC 63140 |||| | ||| ||||||||||||||| ||| | ||| | | | | ||||| || | Sbjct 863064 TAAATAAATCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCACGAATCTCCTCTTTAC 863123 Query 63141 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63200 | ||||||| | | ||||| || | | ||||||| |||||| || |||||||| | Sbjct 863124 CATGATTCTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGCTCCAAGTAAA 863183 Query 63201 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63260 | || || | || || | ||||| || || ||||| | |||||||| || | || Sbjct 863184 TAGCAATGGCACCTGGTCTCTTGTTACCACCTTGATCCACATATCTAGCAGTACTGTTGA 863243 Query 63261 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTC 63320 | || | | ||| ||||| ||||| |||||||||||||| || || | ||||| | Sbjct 863244 ACACACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCAATATACGAAC 863303 Query 63321 CACTGGCACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379 || ||| |||||| || ||| ||| ||||| || || || || | ||||| || || Sbjct 863304 CAGTGGAACGAATGTTGTGAATGTGA-AGACCAATACCACCAGCAGTCTTAGAAATCAAA 863362 Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439 || || |||| || ||||| ||||| || || ||| ||||| |||| || || Sbjct 863363 GCACACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCATTGCAACTAAG 863422 Query 63440 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGA 63499 || || ||||| || | || ||| || ||||| || || || || || || || Sbjct 863423 AAGCATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGGTGATGCATGT 863482 Query 63500 GTAAACCATTTTTCAGAAAGTAGATTGTACG-TCTCAATAGCTGAGTCTATATCCCATTG 63558 || || || | | || | | | || | | ||| | || || ||||| Sbjct 863483 GTGAAGTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTAG-GAATATCATCACC 863541 Query 63559 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63618 |||||| || || || || | ||| | | ||| || ||||||||| | | ||| || Sbjct 863542 ATGAATACCGACGGCCACTCTCATAAGAAGGTGTTGTGGTCTTTCAGCAACCTTACCATT 863601 Query 63619 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63678 ||| |||||| || || ||||||||| || |||||||| |||||||| ||||| Sbjct 863602 AATTCTCAACAGATAAGAACGTTCCAAAGTCTTGAAACCAAAGTAGTTGTAACTGAAGTC 863661 Query 63679 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGT 63738 || |||||| |||| | ||||| | | |||||||| | |||| ||| | | Sbjct 863662 ACGGTCGTAATTAATGGCTGAGTTCAACTCATCCTTATGCTCCATAAC--AATC--TTAT 863717 Query 63739 AATACT----TGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATA 63794 || || ||||| |||||| | | ||| | || |||||| |||||| ||| Sbjct 863718 AAACCTCATCAGAAATCATAGGAGACTTCTTCTGGGTCTTTGGATTGTAGTAGTTGTATA 863777 Query 63795 AATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTA 63854 |||||| || || ||| || | || || || | ||||| | |||||| | || | Sbjct 863778 GATCCTCTATAACATCAGAGAAAGGCTTCTTAGTCTGCTTGTGCAAATTTGAGATTGCAA 863837 Query 63855 TTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCG 63913 ||||||||| | | | ||||| || ||||| ||| || || || ||||| |||| Sbjct 863838 GTCTAGCGGCCAAAGTAGCATAGTCTGGATGCATTGTGGT-CATGTATGCTGCAGTTTCA 863896 Query 63914 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCA 63949 || | || | ||||||| || | || || |||||| Sbjct 863897 GCAGTCAAATTGTCCAACTCAATGGTGGTAACACCA 863932 >seq23 Length=1356690 Score = 192 bits (212), Expect = 7e-44 Identities = 574/868 (66%), Gaps = 22/868 (3%) Strand=Plus/Minus Query 32391 TTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTG 32450 || || || |||||||| ||||| | || || |||||||||||||| ||||||||||| Sbjct 991502 TTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAATGGATTT 991443 Query 32451 GTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACA-AATTC 32509 || || || |||| || | |||||||| | || ||| || || || ||| || || Sbjct 991442 GTGACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGC-ACAGAACTC 991384 Query 32510 TATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGT 32569 | || |||||| || | ||||| || | | |||||||||||| | | Sbjct 991383 AACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAGCGTCTCT 991324 Query 32570 A-AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTT-CTTCA 32627 ||||| | || | ||||| || || || || || || |||| | | | | | Sbjct 991323 CCAGAAAGTTTTCT-CAATATTAACAGCCTCGGTCATGATTC-TCTTGATAATGACCTTA 991266 Query 32628 CTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCG 32687 || ||||||| | || || |||| | ||||| |||||| ||||||||||| Sbjct 991265 CTTGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGACCCTCA 991206 Query 32688 TCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGC 32747 ||||| | || | ||||| || ||||| || || ||||| | || | ||| || | | Sbjct 991205 TCTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCTTCAAC 991146 Query 32748 CAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATA 32807 || || ||||| ||||| |||||||| || || | ||||| | || ||||| |||| Sbjct 991145 CAGAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAGCAACC 991086 Query 32808 AGTCTCTCTCCATAACCGGCGCTGTCA---TGTATCCACTTTTGAGCCCAATCGGCCTTC 32864 | |||||| |||| || ||| | |||||| | |||||| |||||| Sbjct 991085 AATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAGCCTTC 991026 Query 32865 TTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCT 32924 | || | | || ||||| | || ||||| || | |||| || || | || Sbjct 991025 TCCTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCTTGTCA 990966 Query 32925 TTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATT 32984 | | ||| || || |||||||| ||| | || || || ||||| |||| || Sbjct 990965 GTGATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCATAATC 990906 Query 32985 TGAAATCCGTAGAAGCATCTAGCCTC-GGTAATCTGTACTTCTG-TACAAAATCGTTC-- 33040 || || || |||||| ||| ||||| ||||| ||| || ||| | || || |||| Sbjct 990905 TGGAAACCATAGAAGGCTCTTGCCTCAGGTAA-CTGCAC--CTGCTTCATAA-AGTTCTG 990850 Query 33041 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33100 ||| ||||| |||| || || || || || ||||| || ||||| ||| | || Sbjct 990849 TGCCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAGAGAT 990790 Query 33101 AAAATATTTTTCGTCTGGTGTTAGT----TTATTCCAATCATTGATATCTTTAGATATAT 33156 || ||| | || | ||| || | | |||||| || | | ||| || || | || Sbjct 990789 GAAGTATCTCTCAT-TGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAGAGAT 990731 Query 33157 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCAT 33216 | | || || | ||||| || || ||||| ||||| || ||||| | ||| || |||| Sbjct 990730 CGATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATATCAT 990671 Query 33217 GATATTGAATTGGAAAAATAACAAATCT 33244 || ||||| || || || || ||||| Sbjct 990670 CGTACTGAATAGGGAACATCACGAATCT 990643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631762388000