Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq25 159 6e-34 seq12 149 1e-30 seq1 147 4e-30 >seq25 Length=1112461 Score = 159 bits (176), Expect = 6e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || || ||||||||||| || || ||||| || ||||| || || ||||| Sbjct 696389 ACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCC 696448 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || ||||| ||||| ||||| | || || ||||| |||||||| |||||||| |||||| Sbjct 696449 AATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGA 696508 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||| ||| || ||||| ||||| | ||||| || || || ||||| || ||| Sbjct 696509 ATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAACGTGATTGTCTTT 696568 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || | ||||| || || || ||||| ||| Sbjct 696569 CCAGTTAATGTCTTCACAAAAATTTGCATGATG 696601 Score = 158 bits (174), Expect = 2e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || ||||||||||| || || ||||| || ||||| || || ||||| Sbjct 695705 ACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCC 695764 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || ||||| ||||| ||||| | || || ||||| |||||||| |||||||| |||||| Sbjct 695765 AATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGA 695824 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||| ||| || ||||| ||||| | ||||| || || | ||||| || ||| Sbjct 695825 ATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTTT 695884 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| | || || || || || |||||| Sbjct 695885 CCCGTCAACGTTTTAACAAAGATTTGCATT 695914 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || || ||||||||||| || || ||||| || ||||| || || ||||| Sbjct 695933 ACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCC 695992 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || ||||| ||||| ||||| | || || ||||| |||||||| |||||||| |||||| Sbjct 695993 AATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGA 696052 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||| ||| || ||||| ||||| | ||||| || || | ||||| || ||| Sbjct 696053 ATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTTT 696112 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| | || || || || || |||||| Sbjct 696113 CCCGTCAACGTTTTAACAAAGATTTGCATT 696142 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || || ||||||||||| || || ||||| || ||||| || || ||||| Sbjct 696161 ACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCGTCTTCC 696220 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || ||||| ||||| ||||| | || || ||||| |||||||| |||||||| |||||| Sbjct 696221 AATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGA 696280 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||| ||| || ||||| ||||| | ||||| || || | ||||| || ||| Sbjct 696281 ATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATTGTCTTT 696340 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| | || || || || || |||||| Sbjct 696341 CCCGTCAACGTTTTAACAAAGATTTGCATT 696370 >seq12 Length=1432871 Score = 149 bits (164), Expect = 1e-30 Identities = 165/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| |||||||| || || ||||| || |||||||| || || || | || || ||||| Sbjct 1192737 CAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGACAAAGTTCTGCCATC 1192796 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 || |||||||| || || || || | ||| || || || ||||| || || |||||||| Sbjct 1192797 CTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTTGTC 1192856 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| |||||| |||||| || |||||||| | || || || ||||||||||| || Sbjct 1192857 TTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCCAAGGTGATAGT 1192916 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTA 68468 || || || | ||||| ||||| || |||||| || || Sbjct 1192917 CTTACCGGTCAAAGTCTTAACGAAAATTTGCATTTTGATA 1192956 >seq1 Length=1856900 Score = 147 bits (162), Expect = 4e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| |||||||| || || || || || || ||||| || || || | || || ||||| Sbjct 768247 CAAGACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTACCATC 768188 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 || |||||||| || || || || | ||| ||||| || |||||||| || ||||| || Sbjct 768187 CTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCCTCCTTATC 768128 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 || |||||| |||||| || ||||| || | || || || ||||||||||| || Sbjct 768127 CTGGATCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCACCTCCAAGGTGATAGT 768068 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTAT 68469 || ||||| | |||||| ||||| || |||||| | |||| Sbjct 768067 CTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTTTCTAT 768027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622054391600