Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq12 179 4e-40 seq28 87.8 2e-12 >seq12 Length=1432871 Score = 179 bits (198), Expect = 4e-40 Identities = 892/1404 (64%), Gaps = 21/1404 (1%) Strand=Plus/Plus Query 113935 TCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGC 113994 |||| ||||||| || | ||| |||| || || || || || | ||||| || |||| Sbjct 862189 TCTCTGATAGATGTTAGAGGTGAATGGTTCGAAACATTCGTTATAACCCATAATCTGGGA 862248 Query 113995 GGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAAT 114054 || || || || ||||| ||||||| | ||| ||| | ||||| | | ||| Sbjct 862249 AGTAGAAGCAGTCGGCATAGGTGCCACCAAAAGAGAGTTTCTAAGACCAGTCTTGGCAAT 862308 Query 114055 GCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAA 114114 |||| || | |||||||| | | | | || | |||||||||| | Sbjct 862309 CTTAGCCTTCAGAGTATCCCAGTCCCACAGATCCGTAGGCTTTTTGTTCCACATATCATA 862368 Query 114115 CTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTC 114174 || || ||||| | || ||||| || || ||| |||||| || | ||||| || | Sbjct 862369 TTGTAGAATACCCTTTGAAGCTGGAGAGCCTTCATATGTCTGATAAGTACCCTCTTCCAC 862428 Query 114175 CGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATT 114234 || | | | | |||| | || |||||||||| |||||||| || || || Sbjct 862429 AGCAAGCTGGTTGGATTCCTCCAATGCAGCGTGATACAAGGTCTCAAATATCTGAATGTT 862488 Query 114235 CATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAG 114294 | || || || | ||||| | |||| || | || ||| || || Sbjct 862489 AAGCTCCCGTGCATCTGGACAGTCAAAAGGTAGTCTAAGCATGAAGAAGGTATCAGCAAG 862548 Query 114295 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC-- 114352 ||| |||| ||| || |||| || | | |||||| || || || || || ||| Sbjct 862549 ACCCTGGATACCAAGAGCAATAGGTCTGTTTCTCATGTTGGAGTTACGGGC---CTCAGG 862605 Query 114353 -ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGAT 114411 || ||||| |||| || || ||||| | |||| || ||| ||||| || || || Sbjct 862606 AACTGGATAGTAATTTCTGTCAATAACACGGTTTAAGTTACGGGTAACAACTTTAGTAAT 862665 Query 114412 TTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT-TGACATA-CTTAGGAAGG 114469 | || | ||| ||| | | || | || | || |||| |||| | | ||| ||| Sbjct 862666 CTTGTGCAACTTCTCGAAGTTGAACCAGCAATGATCCTCATCTGACTCAACAAAGGCAGG 862725 Query 114470 G---CGATTGACG-CCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 114525 | | || | ||| ||||||||| |||||| | | |||||| | || Sbjct 862726 CAAACAAATGTTGGCCAAGTTACACACACCAACCTCATCTGGAGAGGAGTACTCGACAAC 862785 Query 114526 TTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 114585 || ||||| || ||| || ||||| ||||||||||| ||||| |||| | || Sbjct 862786 CTCACAGCACAAGTTCGAAGATTTGATGGTACCCAAGTTCTTCTGATTACTCTTTCTATT 862845 Query 114586 ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 114645 ||| ||||||||||| | |||| | || || || || || || || | || | ||| Sbjct 862846 ACAAGCATCCTTGTAGATCATGAAAGGTGTACCAGTTTCTGTCTGAGCCTCCAAAATCTG 862905 Query 114646 CTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTG 114704 | ||| | | || | | || ||| || | | || || || | |||||| | Sbjct 862906 GTACCATAACTTCTGAGCCTT-CACTGTTCTTCTTCCACGTCCTTCTTTCTCGTAACGAG 862964 Query 114705 TGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGC 114764 |||| | || ||||| ||||| | |||||||| |||||||||| | || Sbjct 862965 TGTACAATTTCTCGAACTCGTCACCGTAAACATCTGAGAGACCTGGTGCCTCAGAAGGAG 863024 Query 114765 AGAAGAGAGACCA-TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAG 114823 |||| | | ||| ||| | ||| || ||||||||||| || | ||||| ||||| Sbjct 863025 AGAACAATGTCCACTTGTCGTTGCTC-TCCACACGCTTCATAAATAAATCTGGAATCCAA 863083 Query 114824 AGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCC 114883 ||||||| || | ||| || ||| || || | || ||||| | | || Sbjct 863084 AGAGCTGGAAACAAATCACGTGCACGAATCTCCTCTTTACCATGATTCTTTCTGATATCG 863143 Query 114884 AAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACCCCTTACG 114942 | |||||| | |||||| || ||||| || |||| ||| | || || | ||| | Sbjct 863144 ATAAAGTCGAAGATATCAGCATGCCAAGGCTCCAAGTAAATAGCAATGGCACCTGGTCTC 863203 Query 114943 ACG--ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATG 115000 | |||| | || | ||||| || || || || || || |||| ||| ||||| Sbjct 863204 TTGTTACCACCTTGATCCACATATCTAGCAGTACTGTTGAACACACGAACCATCGGAATT 863263 Query 115001 ATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGG 115060 ||||| | ||| ||||| || || |||| || | ||| | | | || Sbjct 863264 ATACCGTTGGATGTACCATTAGTACCGGCAATATACGAACCAGTGGAACGAATGTTGTGA 863323 Query 115061 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCG 115120 ||||| | ||||||||| || || ||| || || || |||| | | | | || Sbjct 863324 ATGTGAAGACCAATACCACCAGCAGTCTTAGAAATCAAAGCACACTGTTTCAAAGTATCG 863383 Query 115121 TAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGC 115180 ||||| || || || |||||| | || |||| | | |||||| ||||| || || Sbjct 863384 TAGATACCTTCAATAGAGTCATCTTTCATTGCAACTAAGAAGCATGATGACATCTGAGGG 863443 Query 115181 CTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACAT 115239 | ||| |||||||| ||||| | ||||||| || || |||| || || | ||||| Sbjct 863444 CGTGGAGTACCAGCATTGAACAACGTTGGTGATGCATGTGTGAA-GTATCTCTTTGACAT 863502 Query 115240 CTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCG 115299 | || || | ||||| || ||||| || || || |||||||||| | || | Sbjct 863503 CAAGTCATATGATTCCAACACCTTAGGAATATCATCACCATGAATACCGACGGCCACTCT 863562 Query 115300 CATAAACATGTATTGGGGTGTTTC 115323 ||||| | || ||| ||| |||| Sbjct 863563 CATAAGAAGGTGTTGTGGTCTTTC 863586 >seq28 Length=771433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 160712 GTGGCACCAAGATCTGGTCTCGCTGTGAAGAGTGGTATCCAAGTTGGTGCGGGTGTTGTG 160771 ||||||||||||||||| | || |||||| |||||| || ||||| ||||| | Sbjct 288855 GTGGCACCAAGATCTGGATTAGCGGTGAAGCATGGTATTCATACCGGTGCTGGTGTCATT 288914 Query 160772 GATCCAGACTACACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGGCACACAGATTTC 160831 || ||||||||| ||| ||||| || || || |||||||| | | | | ||||||| Sbjct 288915 GACTCAGACTACAGAGGAGAAGTTAAGGTTGTACTCTTCAACTTCAGCGATAAAGATTTC 288974 Query 160832 CAAATCAAAAGGGGGGATCGCATCGCGCAACTCATCTTAGAGA 160874 || || ||| ||| | || || |||||||| | |||| Sbjct 288975 AGCATTAACGCGGGTGATAGAATTGCACAACTCATTCTTGAGA 289017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353375992400