Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05-
08] 30 sequences; 12,880,761 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq25 132 5e-26
seq12 102 8e-17
seq1 96.9 3e-15
>seq25
Length=1112461
Score = 132 bits (146), Expect = 5e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || | ||| ||||| || | ||||| || || ||||||||||| |||||||| |
Sbjct 695915 CCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAA 695974
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || | ||||||| | ||||| |||||| | || | || ||||||||| || |||
Sbjct 695975 AGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGA 696034
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|||||||| || ||||| || |||||||| ||| || | || ||| | || ||
Sbjct 696035 ATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACC 696094
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|||| || | ||||| || ||||| ||||| || || |||||||||
Sbjct 696095 TCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 696142
Score = 132 bits (146), Expect = 5e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || | ||| ||||| || | ||||| || || ||||||||||| |||||||| |
Sbjct 696143 CCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAA 696202
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || | ||||||| | ||||| |||||| | || | || ||||||||| || |||
Sbjct 696203 AGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGA 696262
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|||||||| || ||||| || |||||||| ||| || | || ||| | || ||
Sbjct 696263 ATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACC 696322
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|||| || | ||||| || ||||| ||||| || || |||||||||
Sbjct 696323 TCTAGCGTGATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 696370
Score = 125 bits (138), Expect = 7e-24
Identities = 159/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285
|| ||||| || | |||| || || ||||||||||| |||||||| | | || |
Sbjct 695696 AACCTAAGAACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTT 695755
Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345
||||||| | ||||| |||||| | || | || ||||||||| || |||||||||||
Sbjct 695756 CCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCC 695815
Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405
|| ||||| || |||||||| ||| || | || ||| | || || |||| ||
Sbjct 695816 TTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTG 695875
Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
| ||||| || ||||| ||||| || || |||||||||
Sbjct 695876 ATTGTCTTTCCCGTCAACGTTTTAACAAAGATTTGCATT 695914
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || | ||| ||||| || | ||||| || || ||||||||||| |||||||| |
Sbjct 696371 CCTCCCCTCAACCTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAA 696430
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || | ||||||| | ||||| |||||| | || | || ||||||||| || |||
Sbjct 696431 AGTGTTCTTCCGTCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGA 696490
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|||||||| || ||||| || |||||||| ||| || | || ||| | || ||
Sbjct 696491 ATTCCTTCCTTATCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACC 696550
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||| || | ||||| || || || || || || |||||||||||
Sbjct 696551 TCTAACGTGATTGTCTTTCCAGTTAATGTCTTCACAAAAATTTGCAT 696597
>seq12
Length=1432871
Score = 102 bits (112), Expect = 8e-17
Identities = 168/241 (70%), Gaps = 1/241 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || | |||||| | || | |||| || || || || || |||||||| || |
Sbjct 1192722 ACCACCTCTCAATCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGA 1192781
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || | | || || | |||||| || ||| | || | | |||||| || || ||
Sbjct 1192782 CAAAGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGG 1192841
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||||| || || ||||| || |||||||| ||| || | || || | |||||
Sbjct 1192842 GATTCCCTCCTTGTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCCAC 1192901
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAATGAT 64455
|| | || | ||||| ||||||||||| || ||||||||||||||||| |||| |||
Sbjct 1192902 CTCCAAGGTGATAGTCTTACCGGTCAAAGTCTTAACGAAAATTTGCATTTTGATAA-GAT 1192960
Query 64456 A 64456
|
Sbjct 1192961 A 1192961
>seq1
Length=1856900
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || | |||||| | || | |||| || ||||| || ||||||||||| || |
Sbjct 768262 ACCTCCTCTCAATCTCAAGACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGA 768203
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || | | || || | |||||| || ||| | || | | ||| || || || ||
Sbjct 768202 CAAAGTTCTACCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGG 768143
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|||||| || || || || || |||||||| ||| || | ||||| | |||||
Sbjct 768142 AATTCCCTCCTTATCCTGGATCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCAC 768083
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| | || | ||||| || ||||| || || |||||||||||||||||
Sbjct 768082 CTCCAAGGTGATAGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTT 768032
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499644612633200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |