Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq12 212 8e-50 >seq12 Length=1432871 Score = 212 bits (234), Expect = 8e-50 Identities = 1159/1823 (64%), Gaps = 43/1823 (2%) Strand=Plus/Plus Query 115549 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 115608 |||| || || | ||||||||| || ||||| | |||| ||||||| |||| | ||| Sbjct 861842 GCCTGTGTACGTAAGTAGTACATACCTGTCTTCAAGCCCTTCTTCCAGCCATAAAAGTGC 861901 Query 115609 ATTGAGGACAACTTGGAGAGTGTTGG--ACTTTCCATGAAGAGGTTCATACTTTGGGATT 115666 || || | ||| || | ||||| ||| ||| || ||||||| ||| || | Sbjct 861902 ATGGAAGTCAATTTACCCATAGTTGGTGACTGCAAATG--GATGTTCATAGATTGAGACT 861959 Query 115667 GATCGATGAA-GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCC 115725 | |||| | ||| |||| ||| || |||||| | || ||| |||| || ||| Sbjct 861960 GGCAGATGTATGCG-CCCCTATCAGCAGCCATAACGATGACAGACTTCTGAGAAATCTCC 862018 Query 115726 CACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAG 115785 || || || ||||| | ||||| || | ||| || | | | || || ||||| Sbjct 862019 CAAACTGTCCTGTACAACTTCTTGATCTTATCGGGAACGTTTGGCAAGTTCTGAATAGAA 862078 Query 115786 CCACCTGCCTTGACC-ATGAGATCCTTCAT---ATCCTTTGACCAGAGACCAATCTTCTT 115841 || || | ||| |||| | |||||| ||| || ||| | || || | | Sbjct 862079 CCGT-TGTCGTGAATGATGAAGTTCTTCATTGCATCGTT---CCATATTCCCATGTCAAT 862134 Query 115842 GAGATC-CTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCA 115900 ||||| ||| || | || ||| || | || ||||| || || | |||| Sbjct 862135 AAGATCTCTCAAC-ATGTAAGGATTAACGATCTGGAATTCACCAGCAAGAACTCTTCTCT 862193 Query 115901 GATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGG 115960 |||||||||| | ||| |||| || || || || || | ||||| || |||| || | Sbjct 862194 GATAGATGTTAGAGGTGAATGGTTCGAAACATTCGTTATAACCCATAATCTGGGAAGTAG 862253 Query 115961 AGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTT 116020 | || || ||||| ||||||| | ||| ||| | ||||| | ||| Sbjct 862254 AAGCAGTCGGCATAGGTGCCACCAAAAGAGAGTTTCTAAGACCAGTCTTGGCAATCTTAG 862313 Query 116021 CCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGA 116080 |||| || | |||||||| | | | | || | |||||||||| | || | Sbjct 862314 CCTTCAGAGTATCCCAGTCCCACAGATCCGTAGGCTTTTTGTTCCACATATCATATTGTA 862373 Query 116081 GGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCA 116140 | ||||| | || ||||| || || ||| |||||| ||| | ||||| || | || | Sbjct 862374 GAATACCCTTTGAAGCTGGAGAGCCTTCATATGTCTGATAAGTACCCTCTTCCACAGCAA 862433 Query 116141 ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 116200 | | | |||| | || |||||||||| |||||||| || || || | Sbjct 862434 GCTGGTTGGATTCCTCCAATGCAGCGTGATACAAGGTCTCAAATATCTGAATGTTAAGCT 862493 Query 116201 CCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTT 116260 || || || | ||||| | || | || | || ||| || ||||| | Sbjct 862494 CCCGTGCATCTGGACAGTCAAAAGGTAGTCTAAGCATGAAGAAGGTATCAGCAAGACCCT 862553 Query 116261 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGG 116317 ||| ||| || |||| || | | |||||| || || || || || ||| || | Sbjct 862554 GGATACCAAGAGCAATAGGTCTGTTTCTCATGTTGGAGTTACGGGC---CTCAGGAACTG 862610 Query 116318 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 116377 |||| |||| || || ||||| | |||| || ||| ||||| || || || | | Sbjct 862611 GATAGTAATTTCTGTCAATAACACGGTTTAAGTTACGGGTAACAACTTTAGTAATCTTGT 862670 Query 116378 GAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT-TGACATA-CTTAGGAAGGG---C 116432 | | ||| ||| | | || | || | || |||| |||| | | ||| ||| | Sbjct 862671 GCAACTTCTCGAAGTTGAACCAGCAATGATCCTCATCTGACTCAACAAAGGCAGGCAAAC 862730 Query 116433 GATTGACG-CCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 116491 | || | ||| ||||||||| |||||| | | |||||| | || || Sbjct 862731 AAATGTTGGCCAAGTTACACACACCAACCTCATCTGGAGAGGAGTACTCGACAACCTCAC 862790 Query 116492 TACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 116551 ||||| || ||| || ||||| ||||||||||| ||||| |||| | ||||| | Sbjct 862791 AGCACAAGTTCGAAGATTTGATGGTACCCAAGTTCTTCTGATTACTCTTTCTATTACAAG 862850 Query 116552 CATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 116611 |||||||||||| ||| | || || || || || || || | || | ||| | || Sbjct 862851 CATCCTTGTAGATCATGAAAGGTGTACCAGTTTCTGTCTGAGCCTCCAAAATCTGGTACC 862910 Query 116612 AT-ACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAG 116670 || || || | | || ||| || | | || || || | |||||| ||||| Sbjct 862911 ATAACTTCTGAGCCT-TCACTGTTCTTCTTCCACGTCCTTCTTTCTCGTAACGAGTGTAC 862969 Query 116671 AGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAG 116730 | ||| ||||| ||||| | | |||||||| |||||||||| | ||| |||| Sbjct 862970 AATTTCTCGAACTCGTCACCGTAAACATCTGAGAGACCTGGTGCCTCAGAAGGAGAGAAC 863029 Query 116731 AGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 116789 | | ||| ||| | || ||| || |||||||| || | ||||| ||||| || || Sbjct 863030 AATGTCCACTTGTCGTTGCT-CTCCACACGCTTCATAAATAAATCTGGAATCCAAAGAGC 863088 Query 116790 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 116849 | || | ||| || ||| || || | || ||||| | | || | ||| Sbjct 863089 TGGAAACAAATCACGTGCACGAATCTCCTCTTTACCATGATTCTTTCTGATATCGATAAA 863148 Query 116850 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGAC---- 116905 ||| | |||||| || ||||| || |||| ||| | || | || | ||| | | Sbjct 863149 GTCGAAGATATCAGCATGCCAAGGCTCCAAGTAAATAGC-AATGGCACCTGGTCTCTTGT 863207 Query 116906 GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATAC 116965 |||| | || | ||||| || || || ||| || || |||| ||| ||||| |||| Sbjct 863208 TACCACCTTGATCCACATATCTAGCAGTACTGTTGAACACACGAACCATCGGAATTATAC 863267 Query 116966 CATCAGATTGGCCATTTGTCCC--CCGAATACGAGACTTGTTGGCTCTGACATCGTGGAT 117023 | | ||| ||||| || || | |||||| || | ||| | | | ||| || Sbjct 863268 CGTTGGATGTACCATTAGTACCGGCAATATACGA-ACCAG-TGGAACGAATGTTGTGAAT 863325 Query 117024 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTA 117083 ||| | ||||||||| || || ||| || || || |||| | | | | |||| Sbjct 863326 GTGAAGACCAATACCACCAGCAGTCTTAGAAATCAAAGCACACTGTTTCAAAGTATCGTA 863385 Query 117084 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT 117143 ||| || || || |||||| | || |||| | | |||||| ||||| || || | Sbjct 863386 GATACCTTCAATAGAGTCATCTTTCATTGCAACTAAGAAGCATGATGACATCTGAGGGCG 863445 Query 117144 TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 117202 ||| |||||||| ||||| | ||||||| || || |||| || || | |||||| Sbjct 863446 TGGAGTACCAGCATTGAACAACGTTGGTGATGCATGTGTGAA-GTATCTCTTTGACATCA 863504 Query 117203 TATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCA 117262 || || | ||||| || ||||| || || || |||||||||| | || | || Sbjct 863505 AGTCATATGATTCCAACACCTTAGGAATATCATCACCATGAATACCGACGGCCACTCTCA 863564 Query 117263 TAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCT 117322 ||| | || ||| ||| |||| | |||||| | ||| || ||| | Sbjct 863565 TAAGAAGGTGTTGTGGTCTTTCAGCAACCTTACCATTAATTCTCAACAGATAAGAACGTT 863624 Query 117323 CCAAGGTCTTGAGACCAAAATAG 117345 |||| ||||||| |||||| ||| Sbjct 863625 CCAAAGTCTTGAAACCAAAGTAG 863647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506969934800