Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq12 138 3e-27 seq1 132 1e-25 seq25 131 4e-25 >seq12 Length=1432871 Score = 138 bits (152), Expect = 3e-27 Identities = 164/222 (74%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | ||| ||||| |||||||| |||| ||||||||| | |||||| || || Sbjct 1192734 TCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGACAAAGTTCTGCC 1192793 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||| |||| |||||| || || ||||| | | |||||| || || ||||| || Sbjct 1192794 ATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTT 1192853 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||||||||| || || | |||||| | | || || ||||| ||||| Sbjct 1192854 GTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCCAAGGTGAT 1192913 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 |||||||| || | ||| || || |||||||| |||||| Sbjct 1192914 AGTCTTACCGGTCAAAGTCTTAACGAAAATTTG---CATTTT 1192952 Score = 95.1 bits (104), Expect = 3e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || || ||||||||||| ||||| || |||||| | || |||||| ||||||| Sbjct 1192820 ATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACTTTGTCGGACTACAACATCCAGAAG 1192761 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGA 201024 ||||||||||||||| | || |||||| Sbjct 1192760 GAGTCTACTCTTCACTTGGTCTTGAGA 1192734 >seq1 Length=1856900 Score = 132 bits (146), Expect = 1e-25 Identities = 163/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | ||| ||||| || ||||| || | ||||||||||| |||||| || || Sbjct 768250 TCTCAAGACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTACC 768191 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||| |||| |||||| || || ||||| | | ||| || || || |||||| || Sbjct 768190 ATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCCTCCTT 768131 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| ||||||||||| || || | ||| || | | || || ||||| ||||| Sbjct 768130 ATCCTGGATCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCACCTCCAAGGTGAT 768071 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||||||||| | || || || |||||||| |||||| Sbjct 768070 AGTCTTACCCGTCAAGGTCTTAACGAAAATTTG---CATTTT 768032 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || || ||||||||||| ||||| || |||||| | || |||||| | ||||| Sbjct 768164 ATCTTTGCTGGTAAGCAGTTGGAGGATGGTAGAACTTTGTCTGACTACAACATTCAGAAG 768223 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGA 201024 || |||||||||||| | || |||||| Sbjct 768224 GAATCTACTCTTCACTTGGTCTTGAGA 768250 >seq25 Length=1112461 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 || ||||| | || ||||| ||||| ||||| | ||||| |||| | || ||||| Sbjct 696383 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 696442 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 ||||||| ||||| ||||| || || | | ||||||||| || ||||||||| Sbjct 696443 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696502 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 || |||||||||||||| || |||| ||||| | | ||| || || |||||||| Sbjct 696503 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAACGTGATT 696562 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || | || |||||||||||||| Sbjct 696563 GTCTTTCCAGTTAATGTCTTCACAAAAATTTG 696594 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 || || || | ||| ||||| ||||| ||||| | ||||| |||| | || ||||| Sbjct 695699 CTAAGAACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 695758 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 ||||||| ||||| ||||| || || | | ||||||||| || ||||||||| Sbjct 695759 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 695818 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 || |||||||||||||| || |||| ||||| | | ||| || || | |||||| Sbjct 695819 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATT 695878 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| | ||||| ||||| ||||| Sbjct 695879 GTCTTTCCCGTCAACGTTTTAACAAAGATTTG 695910 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 || ||||| | || ||||| ||||| ||||| | ||||| |||| | || ||||| Sbjct 695927 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 695986 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 ||||||| ||||| ||||| || || | | ||||||||| || ||||||||| Sbjct 695987 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696046 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 || |||||||||||||| || |||| ||||| | | ||| || || | |||||| Sbjct 696047 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATT 696106 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| | ||||| ||||| ||||| Sbjct 696107 GTCTTTCCCGTCAACGTTTTAACAAAGATTTG 696138 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 || ||||| | || ||||| ||||| ||||| | ||||| |||| | || ||||| Sbjct 696155 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 696214 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 ||||||| ||||| ||||| || || | | ||||||||| || ||||||||| Sbjct 696215 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696274 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 || |||||||||||||| || |||| ||||| | | ||| || || | |||||| Sbjct 696275 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATT 696334 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| | ||||| ||||| ||||| Sbjct 696335 GTCTTTCCCGTCAACGTTTTAACAAAGATTTG 696366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921146852010