Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05-
08] 30 sequences; 12,880,761 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq12 138 3e-27
seq1 132 1e-25
seq25 131 4e-25
>seq12
Length=1432871
Score = 138 bits (152), Expect = 3e-27
Identities = 164/222 (74%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||||| ||| | ||| ||||| |||||||| |||| ||||||||| | |||||| || ||
Sbjct 1192734 TCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGACAAAGTTCTGCC 1192793
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
||| |||| |||||| || || ||||| | | |||||| || || ||||| ||
Sbjct 1192794 ATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTT 1192853
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
|| || ||||||||||| || || | |||||| | | || || ||||| |||||
Sbjct 1192854 GTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCCAAGGTGAT 1192913
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
|||||||| || | ||| || || |||||||| ||||||
Sbjct 1192914 AGTCTTACCGGTCAAAGTCTTAACGAAAATTTG---CATTTT 1192952
Score = 95.1 bits (104), Expect = 3e-14
Identities = 73/87 (84%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
||||| || || ||||||||||| ||||| || |||||| | || |||||| |||||||
Sbjct 1192820 ATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACTTTGTCGGACTACAACATCCAGAAG 1192761
Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGA 201024
||||||||||||||| | || ||||||
Sbjct 1192760 GAGTCTACTCTTCACTTGGTCTTGAGA 1192734
>seq1
Length=1856900
Score = 132 bits (146), Expect = 1e-25
Identities = 163/222 (73%), Gaps = 3/222 (1%)
Strand=Plus/Minus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||||| ||| | ||| ||||| || ||||| || | ||||||||||| |||||| || ||
Sbjct 768250 TCTCAAGACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTACC 768191
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
||| |||| |||||| || || ||||| | | ||| || || || |||||| ||
Sbjct 768190 ATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCCTCCTT 768131
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
||||| ||||||||||| || || | ||| || | | || || ||||| |||||
Sbjct 768130 ATCCTGGATCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCACCTCCAAGGTGAT 768071
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
||||||||||| | || || || |||||||| ||||||
Sbjct 768070 AGTCTTACCCGTCAAGGTCTTAACGAAAATTTG---CATTTT 768032
Score = 86.0 bits (94), Expect = 1e-11
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
||||| || || ||||||||||| ||||| || |||||| | || |||||| | |||||
Sbjct 768164 ATCTTTGCTGGTAAGCAGTTGGAGGATGGTAGAACTTTGTCTGACTACAACATTCAGAAG 768223
Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGA 201024
|| |||||||||||| | || ||||||
Sbjct 768224 GAATCTACTCTTCACTTGGTCTTGAGA 768250
>seq25
Length=1112461
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474
|| ||||| | || ||||| ||||| ||||| | ||||| |||| | || |||||
Sbjct 696383 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 696442
Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534
||||||| ||||| ||||| || || | | ||||||||| || |||||||||
Sbjct 696443 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696502
Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594
|| |||||||||||||| || |||| ||||| | | ||| || || ||||||||
Sbjct 696503 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAACGTGATT 696562
Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || | || ||||||||||||||
Sbjct 696563 GTCTTTCCAGTTAATGTCTTCACAAAAATTTG 696594
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474
|| || || | ||| ||||| ||||| ||||| | ||||| |||| | || |||||
Sbjct 695699 CTAAGAACCAAGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 695758
Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534
||||||| ||||| ||||| || || | | ||||||||| || |||||||||
Sbjct 695759 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 695818
Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594
|| |||||||||||||| || |||| ||||| | | ||| || || | ||||||
Sbjct 695819 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATT 695878
Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| | ||||| ||||| |||||
Sbjct 695879 GTCTTTCCCGTCAACGTTTTAACAAAGATTTG 695910
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474
|| ||||| | || ||||| ||||| ||||| | ||||| |||| | || |||||
Sbjct 695927 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 695986
Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534
||||||| ||||| ||||| || || | | ||||||||| || |||||||||
Sbjct 695987 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696046
Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594
|| |||||||||||||| || |||| ||||| | | ||| || || | ||||||
Sbjct 696047 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATT 696106
Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| | ||||| ||||| |||||
Sbjct 696107 GTCTTTCCCGTCAACGTTTTAACAAAGATTTG 696138
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474
|| ||||| | || ||||| ||||| ||||| | ||||| |||| | || |||||
Sbjct 696155 CTAAGGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAAAGTGTTCTTCCG 696214
Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534
||||||| ||||| ||||| || || | | ||||||||| || |||||||||
Sbjct 696215 TCTTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTA 696274
Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594
|| |||||||||||||| || |||| ||||| | | ||| || || | ||||||
Sbjct 696275 TCTTGAATCTTTTGCTTAACATTATCGATAGTGTCAGAAGATTCAACCTCTAGCGTGATT 696334
Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| | ||||| ||||| |||||
Sbjct 696335 GTCTTTCCCGTCAACGTTTTAACAAAGATTTG 696366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178921146852010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |