Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001005505.1_202015-05- 08] 30 sequences; 12,880,761 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1 205 4e-47 seq28 143 1e-28 seq25 132 2e-25 seq12 131 7e-25 seq23 87.8 7e-12 >seq1 Length=1856900 Score = 205 bits (226), Expect = 4e-47 Identities = 859/1329 (65%), Gaps = 58/1329 (4%) Strand=Plus/Plus Query 451191 AAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAG 451250 |||| ||||| | ||||| || | || || ||||| || || || | || || | Sbjct 1598516 AAGGTAAGCCAAAGATTCAGGTTGAATACAAGGGTGAGACAAAGGTCTTCACACCAGAGG 1598575 Query 451251 AAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTC 451310 | || |||||||||||| | || ||||||| | || || || || |||| Sbjct 1598576 AGATCTCATCTATGGTTTTGACAAAAATGAGAACCACCGCCGAGGCTTAC-TTGGGAGAG 1598634 Query 451311 CAGTT-ACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCA 451369 || | | ||||| || |||| ||||| ||||| ||||||||| | || | || ||| Sbjct 1598635 AAGATGAAGGATGCTGTGGTTACAGTTCCAGCTTACTTCAATGATTCCCAGAGACAGGCA 1598694 Query 451370 ACTAAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTAC 451428 || ||||||||||| ||| |||||||| | ||||| | |||| || ||||| ||||| Sbjct 1598695 ACCAAAGATGCAGGTACA-ATTGCTGGCATGAATGTGATGAGAATCATCAATGAGCCTAC 1598753 Query 451429 AGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTT 451488 ||||| ||| | || ||||| | ||| || | || | || || ||| | || Sbjct 1598754 TGCAGCAGCTATTGCTTATGGTTTGAACAAAGAGAAGGGAAGTGGCGAGAAGAATGTCTT 1598813 Query 451489 AGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGT 451548 | || ||||| ||||| || || |||| ||| | | || ||||| || || | Sbjct 1598814 GATTTTCGATTTGGGTGGTGGTACCTTTGATGTTTCCCTTTTGTCTATTGATGAGGGTAT 1598873 Query 451549 ATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGC 451608 ||||| || ||||| || ||||||||||| | || ||||| || ||||||| | Sbjct 1598874 CTTTGAGGTTAAGGCCACTGCCGGTGATACTCACTTGGGTGGTGAGGACTTTGATAA--C 1598931 Query 451609 A-ATTGTGGAAT--GGTTGAAAACTGATGTTCAA-CGAAA--ACTAAAAGTAGATATTTC 451662 | |||| | | ||| ||| || |||||| |||| || | ||| ||||| | Sbjct 1598932 AGATTGGTTACTCACTTTGCCAAC-GA-GTTCAAGAGAAAGTACCATAAG--GATATGAC 1598987 Query 451663 TACTAACCAAAAAGCACTTAGACGTCTTAAAACATCAGCAGAAAAAGCTAAAATTACACT 451722 | ||| || | ||| | ||| | | | ||| || |||| |||||| | ||| | Sbjct 1598988 TGGTAATCAGAGAGCTTTGAGAAGATTGAGAACTGCATGTGAAAGAGCTAAGAGAACATT 1599047 Query 451723 CAGTTCA---ACACAAACTACTAGTATAAACATTGATAGTTTAGTTGATGGAATGGA-TT 451778 |||| |||| || || | | | || || ||| |||| || || || || Sbjct 1599048 GTCTTCATCTGCACAGAC--CT-CTGTTGAGATCGACTCTTTGTTTGAGGGTATCGACTT 1599104 Query 451779 ATGCTACTACTCTTACCCGTGCTAAATTTGAATCAATTTGTTCCAGTATTTTTGCACGGG 451838 | | || | |||| | || | |||||| |||| | ||| || | | || Sbjct 1599105 CTAC-ACATCAATTACGAGGGCAAGATTTGAGGAGCTTTGCT-CAG-ATCTGTTCAGATC 1599161 Query 451839 TA--ATGAAACCTGTTGATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGA 451896 || || | ||||| || | || || |||||||| || || | || ||||| Sbjct 1599162 TACTCTGGACCCTGTCGAAAAGGTTTTGAGGGATTCTAAGCTTGACAAGGCAAAGATTGA 1599221 Query 451897 TGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTC 451956 || ||||||||||| || ||||||||| ||||||| || |||| | || | ||| Sbjct 1599222 CGAGATTGTGCTTGTTGGTGGTTCTACAAGAATTCCAAAGGTTCAGAAATTGGTTTCTGA 1599281 Query 451957 TTATTTT--------GGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTT 452008 || ||| |||| ||||| || || | || ||||||||||||||| Sbjct 1599282 CTACTTTAACGGTAAGGAGCCTAACAA--ATCTA------TCAACCCTGATGAAGCTGTT 1599333 Query 452009 GCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGAT-----GAAAAAT 452063 || ||||||||||||||||| ||||||||| | || ||| || ||| ||| | | Sbjct 1599334 GCCTATGGTGCTGCAGTTCAGGCAGCTATTTTGACTGGT---GACGATTCCTCGAAGACT 1599390 Query 452064 TAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTG 452123 |||| | | || | | ||||| |||||| ||||| | || | || || ||||||| Sbjct 1599391 CAGGACTTGT--TGCTTTTGGATGTTACACCTTTATCTTTGGGTATCGAGACCGCTGGTG 1599448 Query 452124 GAATGATGACTAATTTAATTAAACGAGGAACT--TCTATTCCTTGTAAAAAGAGTCAAAC 452181 | | ||||| || || ||| | || |||| |||| ||||| || ||| | ||| Sbjct 1599449 GTGTTATGACAAAGTTGATT--CCAAGAAACTCCACTATCCCTTGCAAGAAGTCTGAAAT 1599506 Query 452182 ATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACG 452241 || ||| |||||||| |||||||| ||||| |||| ||||| ||| | Sbjct 1599507 CTTCTCTACTTATGCCGATAACCAGCCAGGTGTGTTGATTCAGGTGTACGAAGGTGAAAG 1599566 Query 452242 TGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTAT 452301 ||| || || || ||| | || | || | | || || || Sbjct 1599567 AACAAGAACCAAGGACAACAATTTGTTGGGTAAGTTCGAGTTGACTGGAATCCCACCAGC 1599626 Query 452302 GCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAA 452361 ||||| || ||| || ||||| |||| | |||| | ||||||||||||||| | || Sbjct 1599627 ACCAAGAGGGGTTCCACAGATTGAGGTTACTTTTGATATCGATGCAAATGGTATTTTGAA 1599686 Query 452362 TGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAA 452421 || ||| || || || |||| || || | || || || || || ||||| || Sbjct 1599687 CGTTTCTGCCGTCGAGAAGGGTACTGGTAAGTCCCAGAAGATCACTATCACAAATGACAA 1599746 Query 452422 AAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGA 452481 | | || || || || || || || || ||||| ||| || || || ||||||| Sbjct 1599747 GGGCAGATTGTCAAAGGAGGAGATCGATAAGATGGTTTCTGAGGCTGAGAAGTTCAAGGC 1599806 Query 452482 TGATGATGA 452490 || ||||| Sbjct 1599807 CGAGGATGA 1599815 Score = 147 bits (162), Expect = 9e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 391041 TATATTATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTT 391100 |||| | |||| | ||||||||||| || |||| ||||| ||||| || | || || Sbjct 768026 TATAGAAAAATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACTATCACCTTGGAGGTG 768085 Query 391101 GAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCT 391160 || || || |||| |||||| | | || ||||| || || |||||||| |||||||| Sbjct 768086 GAGTCTTCCGATACCATTGACAATGTCAAGCAAAAGATCCAGGATAAGGAGGGAATTCCA 768145 Query 391161 CCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCG 391220 ||||||||||| | || || || | || || || | || ||||| ||||||||| | Sbjct 768146 CCTGATCAACAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTAGAACTTTGTCT 768205 Query 391221 GATTATAATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || || || ||| | ||||| | || |||||||| || || ||| |||||||| Sbjct 768206 GACTACAACATTCAGAAGGAATCTACTCTTCACTTGGTCTTGAGATTGAGAGGA 768259 >seq28 Length=771433 Score = 143 bits (158), Expect = 1e-28 Identities = 205/285 (72%), Gaps = 8/285 (3%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| || |||||||||| || |||||||| ||||| || | ||||||||| Sbjct 756681 GTTACTCATGCTGTCGTTACTGTTCCTGCATATTTCAACGATGCCCAGAGACAAGCAACT 756622 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| || ||||| || || || |||||| ||||| ||||||| ||||| || Sbjct 756621 AAAGATGCTGGTACGATTGCAGGCTTGAACGTTCTTAGAATTGTTAATGAGCCTACCGCT 756562 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC-AGAAGaaaaaaaTATTTTAGT 451491 || ||| | || || || | ||| |||| | || || |||| |||| || || Sbjct 756561 GCCGCTATTGCCTACGG-TTTGGA----CAAAGGTGACGAGGAGAAGCAAATCATT--GT 756509 Query 451492 ATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATT 451551 | || || |||||||||||| |||| |||| | || || |||| || ||| | || Sbjct 756508 GTACGACTTGGGTGGAGGAACTTTTGATGTTTCTCTTCTGTCGATTGCAGGTGGTGCCTT 756449 Query 451552 TGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 |||||| ||| || ||||| || ||| | || ||||| || Sbjct 756448 TGAAGTTTTGGCCACAGCAGGTGACACACATTTGGGTGGTGAGGA 756404 >seq25 Length=1112461 Score = 132 bits (146), Expect = 2e-25 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || |||||||| |||| || || || || || || || |||||||| || Sbjct 695914 AATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTC 695855 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | || || | |||| ||||| ||||||||||||||||||||||| || || || Sbjct 695854 TGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCA 695795 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | || || || | || || ||| | ||||| |||||||| | | ||||| || Sbjct 695794 GCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAA 695735 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 |||| | || || |||| |||||||| || | || | |||||| Sbjct 695734 TATTCAAAAAGAGTCAACTCTTCACTTGGTTCTTAGGTTAAGAGGA 695689 Score = 125 bits (138), Expect = 3e-23 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || |||||||| |||| || || || || || || || |||||||| || Sbjct 696142 AATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTC 696083 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | || || | |||| ||||| ||||||||||||||||||||||| || || || Sbjct 696082 TGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCA 696023 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | || || || | || || ||| | ||||| |||||||| | | ||||| || Sbjct 696022 GCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAA 695963 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACA 391282 |||| | || || | || ||||| || || | || |||| ||| ||| || Sbjct 695962 TATTCAAAAAGAGTCTACTCTTCATTTGGTCCTTAGGTTGAGGGGAGGAATGCA 695909 Score = 125 bits (138), Expect = 3e-23 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || |||||||| |||| || || || || || || || |||||||| || Sbjct 696370 AATGCAAATCTTTGTTAAAACGTTGACGGGAAAGACAATCACGCTAGAGGTTGAATCTTC 696311 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | || || | |||| ||||| ||||||||||||||||||||||| || || || Sbjct 696310 TGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGACCA 696251 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | || || || | || || ||| | ||||| |||||||| | | ||||| || Sbjct 696250 GCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTACAA 696191 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACA 391282 |||| | || || | || ||||| || || | || |||| ||| ||| || Sbjct 696190 TATTCAAAAAGAGTCTACTCTTCATTTGGTCCTTAGGTTGAGGGGAGGAATGCA 696137 Score = 120 bits (132), Expect = 1e-21 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | ||||| || || ||| | ||||| || || || || | || |||||||| Sbjct 696600 ATCATGCAAATTTTTGTGAAGACATTAACTGGAAAGACAATCACGTTAGAGGTTGAATCT 696541 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 ||||| | || || | |||| ||||| ||||||||||||||||||||||| || || Sbjct 696540 TCTGACACTATCGATAATGTTAAGCAAAAGATTCAAGATAAGGAAGGAATTCCACCAGAC 696481 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 || || | || || || | || || ||| | ||||| |||||||| | | ||||| Sbjct 696480 CAGCAGAGGTTGATATTTGCCGGTAAGCAATTGGAAGACGGAAGAACACTTTCTGATTAC 696421 Query 391227 AATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACA 391282 |||||| | || || | || ||||| || || | || |||| ||| ||| || Sbjct 696420 AATATTCAAAAAGAGTCTACTCTTCATTTGGTCCTTAGGTTGAGGGGAGGAATGCA 696365 >seq12 Length=1432871 Score = 131 bits (144), Expect = 7e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 391037 ATATTATATTATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGA 391096 |||| ||| | |||| | ||||||||||| || |||| ||||| ||||| || | || Sbjct 1192962 ATATCTTATCAAAATGCAAATTTTCGTTAAGACTTTGACCGGTAAGACTATCACCTTGGA 1192903 Query 391097 TGTTGAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAAT 391156 || || || || || | |||||| | | || ||||| || ||||| ||||| ||||| Sbjct 1192902 GGTGGAGTCTTCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAGGGAAT 1192843 Query 391157 TCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTT 391216 || || ||||| || | || || || | || || || | || ||||| |||||||| Sbjct 1192842 CCCACCAGATCAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACTTT 1192783 Query 391217 GGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 | |||| || || || | ||||| | || |||||||| || || ||| ||||||| Sbjct 1192782 GTCGGACTACAACATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGAGATTGAGAGG 1192726 >seq23 Length=1356690 Score = 87.8 bits (96), Expect = 7e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 451250 GAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCT 451309 ||||| ||||||||||| | | || ||||| || || || || | |||||| Sbjct 839687 GAAATCTCATCTATGGTGTTGAACAAGATGAAGGAGACCGCTGAGGCCAAGATTGGTCAG 839628 Query 451310 CCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCA 451369 ||| || | | || ||||||||||| ||||| ||||| ||||| || | || || Sbjct 839627 CCAATTGAGAAGTCTGTCATTACTGTTCCAGCTTACTTCAACGATGCTCAGAGACAGGCT 839568 Query 451370 ACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACA 451429 || || ||||| || ||||||||| | || ||| | |||| ||||| || ||||| Sbjct 839567 ACCAAGGATGCTGGTGCCATTGCTGGTATGAACGTTTTGAGAATCATTAACGAGCCTACC 839508 Query 451430 GCAGCTGCTCTAGCATATGGACTAGG 451455 || || ||| | || || || |||| Sbjct 839507 GCCGCCGCTATTGCTTACGGTTTAGG 839482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975717640583240